Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0172 ATGGACGTATCACTTCTTTTTACCACAAGTCGCCTCTGTTTCTACATCTTCTTAATAATCATCTCTACCTCTACCTCTTCCTCTACCTCCCCCCCTACAGATCTTGTGAACACACAATTCTTGGAGGTACCCTCTTCTGACTTCTCTAACTCACTCTTGTCCACTATCGATTCTGTGCGAGATGTCATTTCCATTTTCTCTCCGTTCGCTAAATTACTCGGTGATTTTCGACTTTCCACCGCCGTTTCCGATTGTCTCGATCTGCTCGACTTTTCTGCTGATCAATTAAGTTGGTCCCTTTCTGCTACTCGGAATCCCAATGCTAAGAACAATAGCACTGGAGACCTGAGTTCTGATCTGAGAACATGGTTGAGTGCTGCAGTTGTTAATCCAGAAACATGCATGGATGGATTCCAGGGTACCAGCAATGGCATTGTTAAAGATTTGGCGTCTATGGGCATCAACCAGCTAACTTCACAGCTTTATGACCTTCTTAGTATGGTCAAATCAATCTCTAATAATAATTATAATCACAACTTGGATACCGGAAAATTTCCTTCCTGGGTTAAATCGGAGGAGCAGAAGCTGTTACAGGTAGATGAACAATTTTCTGCAGATGTGATTGTAGCTGCTGATGGGACTGGAGATTTTACTAAGGTCATGGATGCGGTGTTGGCGGCCCCTGATTATAGCAGCCGCCGTTATGTGATATACATAAAGAAGGGTGTTTATAACGAGAACGTGGAGATTAAGAAAAAGAAGTGGAATCTCATCATGATTGGAGATGGAATGGATTCCACCATCATATCGGCTAATCGGAGTTTTATCGATGGTTGGACTACTTTTCGGTCTGCAACATTCGCTGTTAGTGGAAGAGGATTCATAGCAAGGGACATAACATTCGAGAATAGTGCAGGGCCAGAGAAACACCAAGCAGTGGCACTTAGATCTGATTCTGATCTGTCCGTGTTTTTCAGATGTGGTATCAAAGGCTACCAAGACACTCTTTATACACACACCATGCGTCAATTCTATCGTGAATGCAAAATCAGTGGTACTGTTGATTTCCTTTTCGGAGATGCAACTGTTGTTTTCCAAAACTGTACTATTCTCGCGAAGAAAGGCCTTCCTAACCAAAAGAATACAATTACCGCTCAAGGACGTAAATCTCCAAATCAACCAACTGGCTTCTCTATTCAATTTTGCAATCTCTCTGCTGATTCAGATCTTCAACCTTTTGTTAATACCACACCTACATATCTTGGAAGACCATGGAAAGAATATTCAAGAACCGTAATCATGCAATCTTATATGAGTGATGCCATTAGACCCCAAGGCTGGCTTGAATGGAATGCTGATTTTGCTTTGAATACATTGTTCTATGCTGAGTATATGAATTTCGGCCCCGGTGGAAGCCTAGTAAACCGAGTTCATTGGCCGGGTTATCATCCATTGAATCAATCCACTCAAGCTGCAAACTTTACCGTTGCTCAATTCATTCAAGGAAACATGTGGTTGCCGTCCACCGGTGTTAAATACACTGCAGGATTTGGGGTCGTTTAA 1563 42.35 MDVSLLFTTSRLCFYIFLIIISTSTSSSTSPPTDLVNTQFLEVPSSDFSNSLLSTIDSVRDVISIFSPFAKLLGDFRLSTAVSDCLDLLDFSADQLSWSLSATRNPNAKNNSTGDLSSDLRTWLSAAVVNPETCMDGFQGTSNGIVKDLASMGINQLTSQLYDLLSMVKSISNNNYNHNLDTGKFPSWVKSEEQKLLQVDEQFSADVIVAADGTGDFTKVMDAVLAAPDYSSRRYVIYIKKGVYNENVEIKKKKWNLIMIGDGMDSTIISANRSFIDGWTTFRSATFAVSGRGFIARDITFENSAGPEKHQAVALRSDSDLSVFFRCGIKGYQDTLYTHTMRQFYRECKISGTVDFLFGDATVVFQNCTILAKKGLPNQKNTITAQGRKSPNQPTGFSIQFCNLSADSDLQPFVNTTPTYLGRPWKEYSRTVIMQSYMSDAIRPQGWLEWNADFALNTLFYAEYMNFGPGGSLVNRVHWPGYHPLNQSTQAANFTVAQFIQGNMWLPSTGVKYTAGFGVV 520
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13467443 13469315 - evm.model.ptg000006l.1116 HCH1g0172 538191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0172 520 FunFam Pectinesterase 200 517 - -
HCH1g0172 520 SUPERFAMILY Pectin lyase-like 203 516 IPR011050 -
HCH1g0172 520 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 52 169 IPR035513 -
HCH1g0172 520 CDD PMEI-like_4 33 172 - -
HCH1g0172 520 SMART PMEI_2 22 171 IPR006501 GO:0004857(InterPro)
HCH1g0172 520 PANTHER PECTINESTERASE 44 508 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
HCH1g0172 520 ProSitePatterns Pectinesterase signature 1. 231 250 IPR018040 -
HCH1g0172 520 Pfam Plant invertase/pectin methylesterase inhibitor 53 164 IPR006501 GO:0004857(InterPro)
HCH1g0172 520 Gene3D - 200 517 IPR012334 -
HCH1g0172 520 Gene3D Invertase/pectin methylesterase inhibitor family protein 21 175 IPR035513 -
HCH1g0172 520 Pfam Pectinesterase 206 503 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0172 HCH-Chr1:13467443 HCH8g0081 HCH-Chr8:3954616 3.50E-132 dispersed
HCH1g0171 HCH-Chr1:13321601 HCH1g0172 HCH-Chr1:13467443 9.40E-97 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0172 K01051 - csv:116402691 818.15