Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH1g0188 | ATGGTTTCAAGTTCATATTCTAATTTATTGGAGCTTGCTTCTGGAGAATCTCCATCTTTTGGTCGCATGAACCGCCAAATTCCACGAATTATGAATGTCGCCGGCTTGATGTCTGATATCGATAATGAACCGTCTTCTTCTTCCGTGCCGCGAGACCGGATCATAATAGTAGCTAATGAACTCCCTATAAGGGCAGATAGGAAATCTGGTGGTTCTACTAATTGGACTTTTAGTTGGGATGAGAATTCTCTTCTCCTTCAATTGAAAGATGGTTTAGGAGATGATGATTTTGAGGTCATTTATGTTGGTTGCCTTAAGGAAGATATTCACCCTAATGAACAAGATGAGGTTTCACAAATCCTTTTGGAGACTTTTAAATGTGTACCGACGTTTCTTGCACAAGATCTTTACACCCATTATTATCATGGCTTCTGCAAGCAACACTTATGGCCTCTGTTTCATTATATGTTGCCTCTGTCCCCAGACCTTGGTGGTAGATTTAATCGTCTGTTATGGCAAGCTTATGTTTCAGTAAATAAGATATTTGCTGATAGAATTATGGAAGTGATTAATCCTGAAGATGATTTTGTTTGGATTCATGATTATCATCTTATGGTGTTGCCAACTTTCTTGAGGAAGAGATTCAATAGGGTCAAACTTGGGTTTTTTCTACATAGTCCATTTCCATCATCTGAAATCTATAGAACACTCCCCATCAGAGAAGAGCTTTTGCGGGCCCTCTTAAATTCAGATTTGATAGGGTTCCACACTTTTGACTATGCACGTCATTTCCTTTCTTGTTGTAGTCGAATGCTCGGTCTTACATACGAATCTAAGCGAGGTTATATAGGGATTGAGTATTATGGTCGCACTATTAGCATCAAAATCCTTCCTGTAGGTATTCATATGGGTCAGCTTCAATCTGTTTTGAGCCTCCCGAAAACTGAAGAGAAGGTTTCTGAGCTTATCACACAGTTCCTTGACCGGGATAGGATAATGCTGCTTGGAGTTGATGACATGGATATATTCAAGGGTATAAGTTTAAAGCTTTTGGCTATGGAACAGCTGCTTCTCACGCACCCAGAGTGGCAAGGGAAAGTAGTGTTGGTGCAAATAGCCAATCCTGCAAGAGGCCGAGGGAAAGATGTCAAAGAAGTTCAGGATGAGACAAAATCAACAGTTAAACGGATTAATGAAACATTTGGGAGGCCTGAGTACCTGCCAGTTATCTTAATTGAGGAACCACTCAAATTTTATGAGAGAATTGCATATTATACAGTTGCTGAGTGTTGTTTGGTCACTGCTGTCAGGGATGGAATGAATCTCATTCCATATGAGTACATAGTCAGTCGCCAAGGAAATGACAAGTTGGATAAACTTTTGGGGTGGGAATCATCAGCACCAAAGAAGAGTATGTTAGTTATCTCTGAGTTTATTGGATGCTCTCCATCTTTAAGTGGAGCAATCCGAGTTAACCCCTGGAACGTCGATGCTGTAGCAGATGCAATGGAGTGTGCCTTGGAGATGGAAGGGCCAGAAAAGCAGCTTCGGCATGAAAAACATTTTAGATATGTCAGCACACATGATGTAGGGTATTGGGCTCGCAGTTTCCTACAAGATTTGGAGAGGACTTGTAGGGACCATGTCAGGCATAGATGTTGGGGTATTGGGTTTGGTTTAAGCTTTAGAGTTGTGGCACTTGATCCAAACTTTAGGAAACTCGCAATGGAGCACATAATTTCAACTTACAAGAGGACTAAATCACGGGCTATTCTTTTGGACTATGATGGTACTTTAATGCCTCAAGCTTCAATTGATAAGAGCCCAACTTCTAAATGCATTGAAATTCTTAATAGCTTGTGCCGGGATAAGAATAATGTGGTTTTCATTGTCAGTGCTAAGGGACGGACGACACTTTCTGGATGGTTTGGCCCTTGTGAAAATCTGGGTATTGCTGCTGAGCATGGATACTTTATTAGGCCAAAGCAAGATGAGGAATGGGAAACCAGTTTACCAGTTGCAGATTGCTATTGGAAGCAGATTGTGCTGCCAGTGATGAAACTCTACACTGAAACAACCGATGGATCAACGATTGAAGACAGAGAAACTGCGGTTGGATGGTGTTATGAAGATGCAGATCCAGATTTTGGTTCATGTCAAGCAAAGGAACTCTTAGATCATCTTGAGAGTGTCCTAGCCAATGAACCTGTTACTGTCAAAAGTGGACAAAATATTGTGGAAGTTAAACCACAGGGTGTCAGCAAGGGACTTGTGGCCAAACGTCTCCTTTCCGCCATGCGAGAGAAGGGAACGCCAGCTGATTTTGTTCTGTGCATTGGAGATGACCGATCTGATGAAGATATGTTTAAGGTGATCTCAAGTTCCATGGCAGGCCCATCCATCACTCCCCGAGCAGAAATTTTTGCATGTACTGTAGGTAAGAAACCAAGTAAAGCCAAGTATTATCTCGACGATCCATCCGAAATTGTCAGGTTGGTGCAGGGATTTGCTTCTGTCTCGAGGCAGAATCTTCCGCCTTATGCTTCCCAAAGTTAA | 2556 | 41.82 | MVSSSYSNLLELASGESPSFGRMNRQIPRIMNVAGLMSDIDNEPSSSSVPRDRIIIVANELPIRADRKSGGSTNWTFSWDENSLLLQLKDGLGDDDFEVIYVGCLKEDIHPNEQDEVSQILLETFKCVPTFLAQDLYTHYYHGFCKQHLWPLFHYMLPLSPDLGGRFNRLLWQAYVSVNKIFADRIMEVINPEDDFVWIHDYHLMVLPTFLRKRFNRVKLGFFLHSPFPSSEIYRTLPIREELLRALLNSDLIGFHTFDYARHFLSCCSRMLGLTYESKRGYIGIEYYGRTISIKILPVGIHMGQLQSVLSLPKTEEKVSELITQFLDRDRIMLLGVDDMDIFKGISLKLLAMEQLLLTHPEWQGKVVLVQIANPARGRGKDVKEVQDETKSTVKRINETFGRPEYLPVILIEEPLKFYERIAYYTVAECCLVTAVRDGMNLIPYEYIVSRQGNDKLDKLLGWESSAPKKSMLVISEFIGCSPSLSGAIRVNPWNVDAVADAMECALEMEGPEKQLRHEKHFRYVSTHDVGYWARSFLQDLERTCRDHVRHRCWGIGFGLSFRVVALDPNFRKLAMEHIISTYKRTKSRAILLDYDGTLMPQASIDKSPTSKCIEILNSLCRDKNNVVFIVSAKGRTTLSGWFGPCENLGIAAEHGYFIRPKQDEEWETSLPVADCYWKQIVLPVMKLYTETTDGSTIEDRETAVGWCYEDADPDFGSCQAKELLDHLESVLANEPVTVKSGQNIVEVKPQGVSKGLVAKRLLSAMREKGTPADFVLCIGDDRSDEDMFKVISSSMAGPSITPRAEIFACTVGKKPSKAKYYLDDPSEIVRLVQGFASVSRQNLPPYASQS | 851 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 17369445 | 17372751 | + | evm.model.ptg000006l.1100 | HCH1g0188 | 538207 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH1g0188 | 851 | FunFam | Alpha,alpha-trehalose-phosphate synthase | 309 | 526 | - | - | |
HCH1g0188 | 851 | Gene3D | Glycogen Phosphorylase B; | 308 | 526 | - | - | |
HCH1g0188 | 851 | CDD | HAD_TPP | 590 | 831 | - | - | |
HCH1g0188 | 851 | Pfam | Trehalose-phosphatase | 592 | 827 | IPR003337 | GO:0005992(InterPro) | |
HCH1g0188 | 851 | SUPERFAMILY | HAD-like | 589 | 836 | IPR036412 | - | |
HCH1g0188 | 851 | Pfam | Glycosyltransferase family 20 | 53 | 542 | IPR001830 | GO:0003824(InterPro)|GO:0005992(InterPro) | |
HCH1g0188 | 851 | SUPERFAMILY | UDP-Glycosyltransferase/glycogen phosphorylase | 52 | 545 | - | - | |
HCH1g0188 | 851 | FunFam | Trehalose-6-phosphate synthase 10 | 719 | 845 | - | - | |
HCH1g0188 | 851 | PANTHER | TREHALOSE-6-PHOSPHATE SYNTHASE | 24 | 839 | IPR001830 | GO:0003824(InterPro)|GO:0004805(PANTHER)|GO:0005829(PANTHER)|GO:0005992(InterPro)|GO:0005992(PANTHER)|GO:0070413(PANTHER) | |
HCH1g0188 | 851 | CDD | GT20_TPS | 53 | 542 | IPR001830 | GO:0003824(InterPro)|GO:0005992(InterPro) | |
HCH1g0188 | 851 | NCBIfam | HAD-IIB family hydrolase | 591 | 792 | IPR006379 | - | |
HCH1g0188 | 851 | Gene3D | Glycogen Phosphorylase B; | 46 | 307 | - | - | |
HCH1g0188 | 851 | FunFam | Trehalose-6-phosphate synthase 2 | 672 | 751 | - | - | |
HCH1g0188 | 851 | NCBIfam | trehalose-phosphatase | 587 | 833 | IPR003337 | GO:0005992(InterPro) | |
HCH1g0188 | 851 | FunFam | alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 | 588 | 705 | - | - | |
HCH1g0188 | 851 | FunFam | alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 | 46 | 307 | - | - | |
HCH1g0188 | 851 | Gene3D | - | 588 | 698 | IPR023214 | - | |
HCH1g0188 | 851 | Gene3D | - | 718 | 845 | IPR023214 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH1g0188 | HCH-Chr1:17369445 | HCH6g1128 | HCH-Chr6:45863708 | 0.00E+00 | dispersed | |
HCH1g0188 | HCH-Chr1:17369445 | HCH14g1006 | HCH-Chr14:37347846 | 0.00E+00 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH1g0188 | K16055 | - | vvi:100252552 | 1489.94 |