Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0188 ATGGTTTCAAGTTCATATTCTAATTTATTGGAGCTTGCTTCTGGAGAATCTCCATCTTTTGGTCGCATGAACCGCCAAATTCCACGAATTATGAATGTCGCCGGCTTGATGTCTGATATCGATAATGAACCGTCTTCTTCTTCCGTGCCGCGAGACCGGATCATAATAGTAGCTAATGAACTCCCTATAAGGGCAGATAGGAAATCTGGTGGTTCTACTAATTGGACTTTTAGTTGGGATGAGAATTCTCTTCTCCTTCAATTGAAAGATGGTTTAGGAGATGATGATTTTGAGGTCATTTATGTTGGTTGCCTTAAGGAAGATATTCACCCTAATGAACAAGATGAGGTTTCACAAATCCTTTTGGAGACTTTTAAATGTGTACCGACGTTTCTTGCACAAGATCTTTACACCCATTATTATCATGGCTTCTGCAAGCAACACTTATGGCCTCTGTTTCATTATATGTTGCCTCTGTCCCCAGACCTTGGTGGTAGATTTAATCGTCTGTTATGGCAAGCTTATGTTTCAGTAAATAAGATATTTGCTGATAGAATTATGGAAGTGATTAATCCTGAAGATGATTTTGTTTGGATTCATGATTATCATCTTATGGTGTTGCCAACTTTCTTGAGGAAGAGATTCAATAGGGTCAAACTTGGGTTTTTTCTACATAGTCCATTTCCATCATCTGAAATCTATAGAACACTCCCCATCAGAGAAGAGCTTTTGCGGGCCCTCTTAAATTCAGATTTGATAGGGTTCCACACTTTTGACTATGCACGTCATTTCCTTTCTTGTTGTAGTCGAATGCTCGGTCTTACATACGAATCTAAGCGAGGTTATATAGGGATTGAGTATTATGGTCGCACTATTAGCATCAAAATCCTTCCTGTAGGTATTCATATGGGTCAGCTTCAATCTGTTTTGAGCCTCCCGAAAACTGAAGAGAAGGTTTCTGAGCTTATCACACAGTTCCTTGACCGGGATAGGATAATGCTGCTTGGAGTTGATGACATGGATATATTCAAGGGTATAAGTTTAAAGCTTTTGGCTATGGAACAGCTGCTTCTCACGCACCCAGAGTGGCAAGGGAAAGTAGTGTTGGTGCAAATAGCCAATCCTGCAAGAGGCCGAGGGAAAGATGTCAAAGAAGTTCAGGATGAGACAAAATCAACAGTTAAACGGATTAATGAAACATTTGGGAGGCCTGAGTACCTGCCAGTTATCTTAATTGAGGAACCACTCAAATTTTATGAGAGAATTGCATATTATACAGTTGCTGAGTGTTGTTTGGTCACTGCTGTCAGGGATGGAATGAATCTCATTCCATATGAGTACATAGTCAGTCGCCAAGGAAATGACAAGTTGGATAAACTTTTGGGGTGGGAATCATCAGCACCAAAGAAGAGTATGTTAGTTATCTCTGAGTTTATTGGATGCTCTCCATCTTTAAGTGGAGCAATCCGAGTTAACCCCTGGAACGTCGATGCTGTAGCAGATGCAATGGAGTGTGCCTTGGAGATGGAAGGGCCAGAAAAGCAGCTTCGGCATGAAAAACATTTTAGATATGTCAGCACACATGATGTAGGGTATTGGGCTCGCAGTTTCCTACAAGATTTGGAGAGGACTTGTAGGGACCATGTCAGGCATAGATGTTGGGGTATTGGGTTTGGTTTAAGCTTTAGAGTTGTGGCACTTGATCCAAACTTTAGGAAACTCGCAATGGAGCACATAATTTCAACTTACAAGAGGACTAAATCACGGGCTATTCTTTTGGACTATGATGGTACTTTAATGCCTCAAGCTTCAATTGATAAGAGCCCAACTTCTAAATGCATTGAAATTCTTAATAGCTTGTGCCGGGATAAGAATAATGTGGTTTTCATTGTCAGTGCTAAGGGACGGACGACACTTTCTGGATGGTTTGGCCCTTGTGAAAATCTGGGTATTGCTGCTGAGCATGGATACTTTATTAGGCCAAAGCAAGATGAGGAATGGGAAACCAGTTTACCAGTTGCAGATTGCTATTGGAAGCAGATTGTGCTGCCAGTGATGAAACTCTACACTGAAACAACCGATGGATCAACGATTGAAGACAGAGAAACTGCGGTTGGATGGTGTTATGAAGATGCAGATCCAGATTTTGGTTCATGTCAAGCAAAGGAACTCTTAGATCATCTTGAGAGTGTCCTAGCCAATGAACCTGTTACTGTCAAAAGTGGACAAAATATTGTGGAAGTTAAACCACAGGGTGTCAGCAAGGGACTTGTGGCCAAACGTCTCCTTTCCGCCATGCGAGAGAAGGGAACGCCAGCTGATTTTGTTCTGTGCATTGGAGATGACCGATCTGATGAAGATATGTTTAAGGTGATCTCAAGTTCCATGGCAGGCCCATCCATCACTCCCCGAGCAGAAATTTTTGCATGTACTGTAGGTAAGAAACCAAGTAAAGCCAAGTATTATCTCGACGATCCATCCGAAATTGTCAGGTTGGTGCAGGGATTTGCTTCTGTCTCGAGGCAGAATCTTCCGCCTTATGCTTCCCAAAGTTAA 2556 41.82 MVSSSYSNLLELASGESPSFGRMNRQIPRIMNVAGLMSDIDNEPSSSSVPRDRIIIVANELPIRADRKSGGSTNWTFSWDENSLLLQLKDGLGDDDFEVIYVGCLKEDIHPNEQDEVSQILLETFKCVPTFLAQDLYTHYYHGFCKQHLWPLFHYMLPLSPDLGGRFNRLLWQAYVSVNKIFADRIMEVINPEDDFVWIHDYHLMVLPTFLRKRFNRVKLGFFLHSPFPSSEIYRTLPIREELLRALLNSDLIGFHTFDYARHFLSCCSRMLGLTYESKRGYIGIEYYGRTISIKILPVGIHMGQLQSVLSLPKTEEKVSELITQFLDRDRIMLLGVDDMDIFKGISLKLLAMEQLLLTHPEWQGKVVLVQIANPARGRGKDVKEVQDETKSTVKRINETFGRPEYLPVILIEEPLKFYERIAYYTVAECCLVTAVRDGMNLIPYEYIVSRQGNDKLDKLLGWESSAPKKSMLVISEFIGCSPSLSGAIRVNPWNVDAVADAMECALEMEGPEKQLRHEKHFRYVSTHDVGYWARSFLQDLERTCRDHVRHRCWGIGFGLSFRVVALDPNFRKLAMEHIISTYKRTKSRAILLDYDGTLMPQASIDKSPTSKCIEILNSLCRDKNNVVFIVSAKGRTTLSGWFGPCENLGIAAEHGYFIRPKQDEEWETSLPVADCYWKQIVLPVMKLYTETTDGSTIEDRETAVGWCYEDADPDFGSCQAKELLDHLESVLANEPVTVKSGQNIVEVKPQGVSKGLVAKRLLSAMREKGTPADFVLCIGDDRSDEDMFKVISSSMAGPSITPRAEIFACTVGKKPSKAKYYLDDPSEIVRLVQGFASVSRQNLPPYASQS 851
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17369445 17372751 + evm.model.ptg000006l.1100 HCH1g0188 538207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0188 851 FunFam Alpha,alpha-trehalose-phosphate synthase 309 526 - -
HCH1g0188 851 Gene3D Glycogen Phosphorylase B; 308 526 - -
HCH1g0188 851 CDD HAD_TPP 590 831 - -
HCH1g0188 851 Pfam Trehalose-phosphatase 592 827 IPR003337 GO:0005992(InterPro)
HCH1g0188 851 SUPERFAMILY HAD-like 589 836 IPR036412 -
HCH1g0188 851 Pfam Glycosyltransferase family 20 53 542 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
HCH1g0188 851 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 52 545 - -
HCH1g0188 851 FunFam Trehalose-6-phosphate synthase 10 719 845 - -
HCH1g0188 851 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 24 839 IPR001830 GO:0003824(InterPro)|GO:0004805(PANTHER)|GO:0005829(PANTHER)|GO:0005992(InterPro)|GO:0005992(PANTHER)|GO:0070413(PANTHER)
HCH1g0188 851 CDD GT20_TPS 53 542 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
HCH1g0188 851 NCBIfam HAD-IIB family hydrolase 591 792 IPR006379 -
HCH1g0188 851 Gene3D Glycogen Phosphorylase B; 46 307 - -
HCH1g0188 851 FunFam Trehalose-6-phosphate synthase 2 672 751 - -
HCH1g0188 851 NCBIfam trehalose-phosphatase 587 833 IPR003337 GO:0005992(InterPro)
HCH1g0188 851 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 588 705 - -
HCH1g0188 851 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 46 307 - -
HCH1g0188 851 Gene3D - 588 698 IPR023214 -
HCH1g0188 851 Gene3D - 718 845 IPR023214 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0188 HCH-Chr1:17369445 HCH6g1128 HCH-Chr6:45863708 0.00E+00 dispersed
HCH1g0188 HCH-Chr1:17369445 HCH14g1006 HCH-Chr14:37347846 0.00E+00 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0188 K16055 - vvi:100252552 1489.94