Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH1g0254 | ATGACGTTGGACGCCGGAGTTTCTTTCAGAATGATTTTTGCGGTGGTTGTTATCTGGGCGGTGGCCGTGTTACTTCGTTTGTACGGCAGGGTGTGGAAGAAGTCGGAGGGGCTGAGGAGGAAGCTAAGGATGCAAGGCATCACCGGACCTCCGCCGTCATTTCTGTACGGAAATTTGCCGGAGATGCAAAAGATCCAGTTGCAGGCGGCGGCGGCGGCGAAGCGGACTACTCCAAATCATGCTTCGGATATCGTCGCCCATGACTACACTTCCACGTTGTTCCCGTATTTCGAGAAGTGGAGAAAAAAATATGGTCCTTTGTACACGTACTCGACAGGGATGAGGCAGCATTTGTACGTAAACAAGGTGGAGCTGGTGAAGGAATTGAATCTCTGCATCAACTTGGATTTGGGAAAGCCTTCTTACGTCACTAAAAGACTTGCCCCAATGCTTGGCAATGGCATCCTTAGGGCGAACGGTGTCGTTTGGAATCAACACAGAAAAATTATTGCTCCTGAATTCTACCAGGACAAAGTCAAGGGTATGGTGGGTCTAATGCTTGATTCAGCGCAGCCGTTGCTTAAGAAATGGGAAGCTAAAATCGACGAAGCTGAAGATATGTTAACAGCAGAAGTTCGAGTCGATGAAGATTTGAGAGGTCTTTCTGCAGATGTGATCGCTCGAGCATGTTTTGGAAGCTCCTACTCCAAAGGCAAAGAAATATTCTCAAAGCTTAGAGATCTTCAGAAAATCCTCAGCCATGGCAGCTTCCTTTTTCGACAGTCCTTCTTTAGTGAGAGATACTTTCAACCAAGGAAGCACCGACAGATCAAAAGGTTGGAGAAAGAGATAGAGTCATTAATATGGGAAACGGTACAAGAACGAGAACAAGAATGCTCGAAAACGACGTCGTCGGAAAAGGACCTGTTGCAGTTGATAATGGAAGGTGCCATTAATGATCCGGTCATCGGAAGTTGCAACGAGTCTTCAAAAAAGTTCATTGTTGATAACTGTAAAAGTATATACTTTGCTGGCCATGAATCAACCGCCGTTGCTGCCTCATGGTGTTTGATGCTCCTGGCTTTGCATCCTGATTGGCAAGATCGTATCAGGACGGAGATCTCTCAGGTTTGCCCCGACGGCTGCCCAGATGCTGCTTCCATTACCCAGTTGAAAGTGGTGACAATGGTGATTCATGAAGCCCTACGGCTGTACTCGCCAGCGGTGTTTGTATCAAGAGAAGCACTTGCAGAAACAAAAATCGGGAACGTTGCGATTCCAGCCGGAGTTTGTTTATGGACTCTAATCCCAATGCTGCACAGAGACGCCGATATCTGGGGAGAAGATGCGAATGAGTTCAAACCAGAGAGATTTGAAAACGGCATTGCTAAGGCTTGCAAATTTCCACAAGCTTATATCCCTTTCGGTGCTGGTCCTCGCCTTTGCATAGGCAAGAATTTCGCTTTGGTGCAATTGAAGATTGTTCTTTCCCTCATAGTTTCCAAGTTTCGTTTTTCTCTTTCTCCCAAATATCATCATTCTCCTTCTTACAGAATGATTGTGGAGCCTGCTGATGGTGTACAAATTCTCTTCCGAAGGCTTTGA | 1605 | 46.42 | MTLDAGVSFRMIFAVVVIWAVAVLLRLYGRVWKKSEGLRRKLRMQGITGPPPSFLYGNLPEMQKIQLQAAAAAKRTTPNHASDIVAHDYTSTLFPYFEKWRKKYGPLYTYSTGMRQHLYVNKVELVKELNLCINLDLGKPSYVTKRLAPMLGNGILRANGVVWNQHRKIIAPEFYQDKVKGMVGLMLDSAQPLLKKWEAKIDEAEDMLTAEVRVDEDLRGLSADVIARACFGSSYSKGKEIFSKLRDLQKILSHGSFLFRQSFFSERYFQPRKHRQIKRLEKEIESLIWETVQEREQECSKTTSSEKDLLQLIMEGAINDPVIGSCNESSKKFIVDNCKSIYFAGHESTAVAASWCLMLLALHPDWQDRIRTEISQVCPDGCPDAASITQLKVVTMVIHEALRLYSPAVFVSREALAETKIGNVAIPAGVCLWTLIPMLHRDADIWGEDANEFKPERFENGIAKACKFPQAYIPFGAGPRLCIGKNFALVQLKIVLSLIVSKFRFSLSPKYHHSPSYRMIVEPADGVQILFRRL | 534 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 41739573 | 41744961 | + | evm.model.ptg000006l.1071 | HCH1g0254 | 538273 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH1g0254 | 534 | PRINTS | E-class P450 group I signature | 221 | 239 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH1g0254 | 534 | PRINTS | E-class P450 group I signature | 472 | 482 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH1g0254 | 534 | PRINTS | E-class P450 group I signature | 101 | 120 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH1g0254 | 534 | PRINTS | E-class P450 group I signature | 333 | 350 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH1g0254 | 534 | PRINTS | E-class P450 group I signature | 482 | 505 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH1g0254 | 534 | PRINTS | E-class P450 group I signature | 353 | 379 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH1g0254 | 534 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 475 | 484 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| HCH1g0254 | 534 | SUPERFAMILY | Cytochrome P450 | 89 | 532 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH1g0254 | 534 | Coils | Coil | 277 | 297 | - | - | |
| HCH1g0254 | 534 | PANTHER | CYTOCHROME P450 FAMILY MEMBER | 21 | 524 | IPR050665 | GO:0004497(PANTHER) | |
| HCH1g0254 | 534 | Pfam | Cytochrome P450 | 93 | 530 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH1g0254 | 534 | Coils | Coil | 194 | 214 | - | - | |
| HCH1g0254 | 534 | Gene3D | Cytochrome P450 | 33 | 534 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH1g0254 | 534 | PRINTS | P450 superfamily signature | 344 | 361 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH1g0254 | 534 | PRINTS | P450 superfamily signature | 482 | 493 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH1g0254 | 534 | PRINTS | P450 superfamily signature | 473 | 482 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH1g0254 | 534 | PRINTS | P450 superfamily signature | 396 | 407 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH1g0254 | HCH-Chr1:41739573 | HCH6g1388 | HCH-Chr6:47765180 | 3.90E-142 | dispersed | |
| HCH9g1267 | HCH-Chr9:37110165 | HCH1g0254 | HCH-Chr1:41739573 | 6.70E-07 | dispersed | |
| HCH1g0254 | HCH-Chr1:41739573 | HCH1g0261 | HCH-Chr1:42671834 | 5.40E-11 | proximal | |
| HCH11g0735 | HCH-Chr11:35848243 | HCH1g0254 | HCH-Chr1:41739573 | 1.00E-32 | transposed | |
| HCH12g0496 | HCH-Chr12:2908578 | HCH1g0254 | HCH-Chr1:41739573 | 3.20E-27 | transposed | |
| HCH1g0254 | HCH-Chr1:41739573 | HCH13g0615 | HCH-Chr13:4703167 | 1.80E-83 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH1g0254 | K20661 | - | csv:101216582 | 741.11 |