Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH1g0256 | ATGGAAACCTCCGCTTCAAATTCCGATCCTTACTCCAATTCTTCTTCTTCTTCGCCTACAGCAAATGCTCGTAACTCCAACAGATTTGGAATGTCTTTTCCGGCTTTGAATTTCTTCCGTTCTCCTTTATCCGTAATTTTAGATCACTCAGGTATTCTCCCTACTAGAAATTTGCGGCATGAATCGGAGCCAGTTTTGGTCAACGGCACTGTCACTCCTGATTTACGACTTTACCCTCACAATCAGAATCACTCGATTACTTCTTCTTCGAGTGATTCCAGTACCTCTGGGGAAGTTTCAATTAGGATTATTGGCTCTGGTGAACAAGATGAGCAGAATACCGGAATTCCGGTTTCGGAAAATCAGTTGGAATCTCGTGATGAAGAACGAGTTCCGTTGGTGTCTACGCCTTCGTCTTCTACTCATTCTGGGAGTGGAAGTGGAGGCGGTCGGGTAGACGGAGAATCGGGGAGTAGTGGGGAAGAGAGTGTGAATAGAGATTCGTCTTATCAGAGATATGATATTCAGCAGGTTGCCAGATGGATTGAACGGATTCTTCCATTCTTTTTGTTACTACTCACAGTCTTCATCCGTGAACATTTAGAAGGTTTTTTCATCACAATTTGGATATCAGCTGTTATGTATAAGTCAAATGATATTGTCAGGAAACAAACTGCTCTAAAGGGAGAGAGGAAGATTTCTATCCTTGCTGGGATTTCTATCGCATTTTTGGTGCATGTTATTGGGATTTACTGGTGGTGTCATACTGATGATCTTCTGTACCCGCTAGTCATGCTCCCGCCAAAGACAATACCACCTTTTTGGCATGCTATGTTCAATATTTTGGTCAATGATACAATGGTGAGGCAGGTTGCAATGGCTCTCAAGTGCATTCTGCTTATTTACTATAAGAATGGCAGAGGCCATAATTTTCGTCGGCAGGGGCAAATTTTAACTTTGGTAGAGTACACTCTTTTATTGTACCGTGCATTATTACCAACACCTGTATGGTACCGATTCTTCTTGAACAAAGATCATGGAAGTCTCTTCTCATCATTGACAACAGGGTTGTATTTAACTTTCAAGCTAACATCTGTTGTTGAGAAGATTCAATCTTTCTTTGCTGCATTTAAGGCCCTATCACGTAAAGAAGTCCATTATGGATCTTATGCCACATCAGAACAGGTCAATGCAGCGGGAGACCTCTGTGCTATCTGTCAGGAGAAGATGAATGCTCCAATCCTGTTACGTTGTAAGCACATCTTCTGTGAAGATTGTGTTTCTGAATGGTTTGAGAGAGAAAGGACATGCCCTCTTTGCCGGGCACTGGTAAAGCCTGCTGAGCTTCGAACCTTTGGTGATGGGTCAACCAGCTTACTCTTTCAGTTATTTTGA | 1395 | 42.44 | METSASNSDPYSNSSSSSPTANARNSNRFGMSFPALNFFRSPLSVILDHSGILPTRNLRHESEPVLVNGTVTPDLRLYPHNQNHSITSSSSDSSTSGEVSIRIIGSGEQDEQNTGIPVSENQLESRDEERVPLVSTPSSSTHSGSGSGGGRVDGESGSSGEESVNRDSSYQRYDIQQVARWIERILPFFLLLLTVFIREHLEGFFITIWISAVMYKSNDIVRKQTALKGERKISILAGISIAFLVHVIGIYWWCHTDDLLYPLVMLPPKTIPPFWHAMFNILVNDTMVRQVAMALKCILLIYYKNGRGHNFRRQGQILTLVEYTLLLYRALLPTPVWYRFFLNKDHGSLFSSLTTGLYLTFKLTSVVEKIQSFFAAFKALSRKEVHYGSYATSEQVNAAGDLCAICQEKMNAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKPAELRTFGDGSTSLLFQLF | 464 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 42052523 | 42063953 | - | evm.model.ptg000006l.1069 | HCH1g0256 | 538275 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH1g0256 | 464 | MobiDBLite | consensus disorder prediction | 76 | 121 | - | - | |
| HCH1g0256 | 464 | SMART | ring_2 | 403 | 440 | IPR001841 | - | |
| HCH1g0256 | 464 | MobiDBLite | consensus disorder prediction | 132 | 147 | - | - | |
| HCH1g0256 | 464 | Pfam | Ring finger domain | 402 | 441 | IPR001841 | - | |
| HCH1g0256 | 464 | PANTHER | UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN | 14 | 464 | IPR044235 | GO:0061630(PANTHER)|GO:0061630(InterPro)|GO:1904294(InterPro) | |
| HCH1g0256 | 464 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
| HCH1g0256 | 464 | CDD | RING-HC_RNFT1-like | 401 | 441 | - | - | |
| HCH1g0256 | 464 | ProSiteProfiles | Zinc finger RING-type profile. | 403 | 441 | IPR001841 | - | |
| HCH1g0256 | 464 | SUPERFAMILY | RING/U-box | 396 | 446 | - | - | |
| HCH1g0256 | 464 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 377 | 450 | IPR013083 | - | |
| HCH1g0256 | 464 | ProSitePatterns | Zinc finger RING-type signature. | 418 | 427 | IPR017907 | - | |
| HCH1g0256 | 464 | MobiDBLite | consensus disorder prediction | 76 | 166 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH1g0256 | HCH-Chr1:42052523 | HCH9g0858 | HCH-Chr9:6106552 | 5.40E-156 | dispersed |
Pathway information