Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH1g0261 | ATGGGGTTTCCATTCGTCGGTGAAAACCTCGAGTTCTTTAAATCAATACGAATCGGCAAACCAGAAAAGTTCGTATTTGAAAGAATGTCCAAATTCAATTCCAAAGTTTTCAAAACATCCATAATTGGTGAACCAACAGCCATGCTTTGTGGAATCACAGGGAATAAATTCTTGTTTTCCAATGAAAACAAGTTAGTCACAGCTTGGTGGCCTGATTCAACCAGCAAGATCTTCAATTCTGACACTGATCATCAAAACACTTCCATTGAAGATACCAAGAGATTTAAGGAGTTGCTTTCAGATTTTCTAAATCCAGAAGCTCTAAAGAGATATATAAGCATCATGGATTCAATTGCTCAAAATCATTTTAAAGAATGTTGGGAAGGAATGCAAGAAGTCACTATTCATTCTCTTTCAAAAAGATTCACTTTCCATTTGTCTTGTAGACTCTTTTTGGGTATGGAAGATACTGAGAAGATGAACAAATATGAAGAGTCTTTTCATATATTGGCTTCTGGGATCTTCTCTCTCCCCATAAACTTACCAGGGACCGCTTTTAACAAAGCAATAAAAGCTTCCAAATTGATAAGAAATGAAATCTCAAATATTATAATGCAGAGAAAAAAGGATCTTTTGGAGAAGACGACTTCTCCCATTAGAGATATTATGTCTCATATGCTTCTGGCGGTAGATCGAGAGGGGCAGCACATGCCAGAGTCGGATATTGTGAGCTATATTCTTAGTTTGCTTTTTGGTGGCCTTGATACTGCAAGTTCTGTCATGACGTTTGTGGCTTACTATCTCGCCGATCATCTTGAAATCTACAATCGAGTCTATGTTGAGCAAATGGAAATTGCAAAATCGAAGAAACCTGGAGAATTATTGAATTGGGATGACCTTCAAAAGATGAAATATTCATGGAATGTTGCATGTGAAGTAATGCGACTTGTTCCTCCTATCGTGGGTACCTTTCGGATGGCAATTACTTCCTTCAATTTTGCTGGATTTTCCATTCCAAAGGGTTGGAAGGTTTATTGGAGCTCATATGCAACACATAAGAATCCAGAGTACTTTCCAGAGCCAGAAAAGTTTGATCCGTTGAGATTTGAAGGAAATGGACCAATCCCATTTAGCTTTGTACCATTTGGAGGAGGCCCAAGAATGTGTCCTGGAAAAGAATATGCTCGTTTGATAGTACTTGTTTTTATGCATAATCTAGTAAAACGATTCAAATGGGAGAAGCTACATCCGAATGGTAAGATTTCTATGGTTCCATCGCCAATCCCAGCTAAAGGCTTACCTGTTCGCCTCCTTCCTCATCATGTTTAG | 1329 | 38.22 | MGFPFVGENLEFFKSIRIGKPEKFVFERMSKFNSKVFKTSIIGEPTAMLCGITGNKFLFSNENKLVTAWWPDSTSKIFNSDTDHQNTSIEDTKRFKELLSDFLNPEALKRYISIMDSIAQNHFKECWEGMQEVTIHSLSKRFTFHLSCRLFLGMEDTEKMNKYEESFHILASGIFSLPINLPGTAFNKAIKASKLIRNEISNIIMQRKKDLLEKTTSPIRDIMSHMLLAVDREGQHMPESDIVSYILSLLFGGLDTASSVMTFVAYYLADHLEIYNRVYVEQMEIAKSKKPGELLNWDDLQKMKYSWNVACEVMRLVPPIVGTFRMAITSFNFAGFSIPKGWKVYWSSYATHKNPEYFPEPEKFDPLRFEGNGPIPFSFVPFGGGPRMCPGKEYARLIVLVFMHNLVKRFKWEKLHPNGKISMVPSPIPAKGLPVRLLPHHV | 442 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 42671834 | 42673740 | + | evm.model.ptg000006l.1064 | HCH1g0261 | 538280 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH1g0261 | 442 | Gene3D | Cytochrome P450 | 1 | 439 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH1g0261 | 442 | CDD | CYP90-like | 28 | 439 | - | - | |
| HCH1g0261 | 442 | FunFam | Taxadiene 5-alpha hydroxylase | 1 | 440 | - | - | |
| HCH1g0261 | 442 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 382 | 391 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| HCH1g0261 | 442 | PRINTS | E-class P450 group I signature | 347 | 371 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH1g0261 | 442 | PRINTS | E-class P450 group I signature | 379 | 389 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH1g0261 | 442 | PRINTS | E-class P450 group I signature | 241 | 258 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH1g0261 | 442 | PRINTS | E-class P450 group I signature | 389 | 412 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH1g0261 | 442 | PRINTS | P450 superfamily signature | 252 | 269 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH1g0261 | 442 | PRINTS | P450 superfamily signature | 389 | 400 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH1g0261 | 442 | PRINTS | P450 superfamily signature | 308 | 319 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH1g0261 | 442 | PRINTS | P450 superfamily signature | 380 | 389 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH1g0261 | 442 | SUPERFAMILY | Cytochrome P450 | 2 | 439 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH1g0261 | 442 | PANTHER | CYTOCHROME P450 26 | 1 | 415 | - | GO:0004497(PANTHER)|GO:0016125(PANTHER)|GO:0016491(PANTHER) | |
| HCH1g0261 | 442 | Pfam | Cytochrome P450 | 6 | 419 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH1g0261 | HCH-Chr1:42671834 | HCH5g1009 | HCH-Chr5:10311557 | 2.60E-192 | dispersed | |
| HCH1g0254 | HCH-Chr1:41739573 | HCH1g0261 | HCH-Chr1:42671834 | 5.40E-11 | proximal | |
| HCH1g0261 | HCH-Chr1:42671834 | HCH1g0262 | HCH-Chr1:42854366 | 1.70E-212 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH1g0261 | K20667 | - | gmx:100801007 | 585.489 |