Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH1g0268 | ATGGAGCCTGGTTCTTCTTCATCTTCTTCTCTTCCCCACGTTTTAGCCGTTGATGACAATCTCATTGATCGAAAACTTGTCGAGAAGTTGCTCAAGAACTCTTCTTGCAGAGTAACGACTGCAGAAAATGGTCGAAGGGCATTGGAGTTTTTGGGATTGTTGGATGAACATCAACACAACAACAACATGGGAATCTCGAAGGTGAACATGATAATCACAGATTATTGCATGCCAGGAATGACAGGATACGAACTTCTTAAGAAAATCAAGAAATCATCATTGATGAAGGAAGTTCCTGTGGTGATTGTGTCATCCGAGAATGTTCCAACTAGAGTTAACAAGTGTTTGGAGGAAGGAGCTGAGATGTTCATGTTGAAGCCACTGAAGCTATCTGATGTGGTGAAATTGAAATGCCAGCTGATGAACTGA | 429 | 41.49 | MEPGSSSSSSLPHVLAVDDNLIDRKLVEKLLKNSSCRVTTAENGRRALEFLGLLDEHQHNNNMGISKVNMIITDYCMPGMTGYELLKKIKKSSLMKEVPVVIVSSENVPTRVNKCLEEGAEMFMLKPLKLSDVVKLKCQLMN | 142 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 43641933 | 43642970 | - | evm.model.ptg000006l.1057 | HCH1g0268 | 538287 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH1g0268 | 142 | CDD | REC_typeA_ARR | 14 | 136 | - | - | |
HCH1g0268 | 142 | Pfam | Response regulator receiver domain | 14 | 135 | IPR001789 | GO:0000160(InterPro) | |
HCH1g0268 | 142 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 12 | 137 | IPR045279 | GO:0009736(InterPro) | |
HCH1g0268 | 142 | SMART | REC_2 | 12 | 137 | IPR001789 | GO:0000160(InterPro) | |
HCH1g0268 | 142 | SUPERFAMILY | CheY-like | 12 | 136 | IPR011006 | - | |
HCH1g0268 | 142 | Gene3D | - | 9 | 142 | - | - | |
HCH1g0268 | 142 | ProSiteProfiles | Response regulatory domain profile. | 13 | 141 | IPR001789 | GO:0000160(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH1g0268 | HCH-Chr1:43641933 | HCH9g1007 | HCH-Chr9:8043156 | 2.30E-41 | dispersed | |
HCH1g0268 | HCH-Chr1:43641933 | HCH1g0631 | HCH-Chr1:55319399 | 3.50E-42 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
33038 | PF00072 | Response_reg | 3.50E-22 | CL0304 | HCH | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH1g0268 | K14492 | - | csv:101208898 | 218.009 |