Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0268 ATGGAGCCTGGTTCTTCTTCATCTTCTTCTCTTCCCCACGTTTTAGCCGTTGATGACAATCTCATTGATCGAAAACTTGTCGAGAAGTTGCTCAAGAACTCTTCTTGCAGAGTAACGACTGCAGAAAATGGTCGAAGGGCATTGGAGTTTTTGGGATTGTTGGATGAACATCAACACAACAACAACATGGGAATCTCGAAGGTGAACATGATAATCACAGATTATTGCATGCCAGGAATGACAGGATACGAACTTCTTAAGAAAATCAAGAAATCATCATTGATGAAGGAAGTTCCTGTGGTGATTGTGTCATCCGAGAATGTTCCAACTAGAGTTAACAAGTGTTTGGAGGAAGGAGCTGAGATGTTCATGTTGAAGCCACTGAAGCTATCTGATGTGGTGAAATTGAAATGCCAGCTGATGAACTGA 429 41.49 MEPGSSSSSSLPHVLAVDDNLIDRKLVEKLLKNSSCRVTTAENGRRALEFLGLLDEHQHNNNMGISKVNMIITDYCMPGMTGYELLKKIKKSSLMKEVPVVIVSSENVPTRVNKCLEEGAEMFMLKPLKLSDVVKLKCQLMN 142
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 43641933 43642970 - evm.model.ptg000006l.1057 HCH1g0268 538287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0268 142 CDD REC_typeA_ARR 14 136 - -
HCH1g0268 142 Pfam Response regulator receiver domain 14 135 IPR001789 GO:0000160(InterPro)
HCH1g0268 142 PANTHER TWO-COMPONENT RESPONSE REGULATOR 12 137 IPR045279 GO:0009736(InterPro)
HCH1g0268 142 SMART REC_2 12 137 IPR001789 GO:0000160(InterPro)
HCH1g0268 142 SUPERFAMILY CheY-like 12 136 IPR011006 -
HCH1g0268 142 Gene3D - 9 142 - -
HCH1g0268 142 ProSiteProfiles Response regulatory domain profile. 13 141 IPR001789 GO:0000160(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0268 HCH-Chr1:43641933 HCH9g1007 HCH-Chr9:8043156 2.30E-41 dispersed
HCH1g0268 HCH-Chr1:43641933 HCH1g0631 HCH-Chr1:55319399 3.50E-42 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33038 PF00072 Response_reg 3.50E-22 CL0304 HCH TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0268 K14492 - csv:101208898 218.009