Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0270 ATGCCGGCATTATTAAACATGAAAACCCTGCTTCTGCTTCAGCTTCTTTTGTTTGTCTTCTTCATTTTAGCTCGCGTCCGTACAGTAAGATGTCTGAACCTATCTTTAAACGACGACGTTTTGGGTTTAATAGTGTTCAAAGCTGATATTCATGACCCTAAGCAAAACCTTGCAACTTGGAATGAAGATGATGACACCCCTTGTAATTGGAATGGTGTCAAATGCAGTCCTCAATCCCATAGAGTTATTGAGCTCAAACTTGATGGTTTCTTTCTCTCCGGCCGTCTCGGCCGGGGCCTTTTTCGCTTACAGTTTCTTCGTAAGCTGTCGATTTCGAACAATAATCTTACTGGGAGTATTACCCCCAGTATTGCTAGAATTGATAACCTTCAGGTGATTGATTTCAGTGGTAATGCTTTCTCAGGAGTAGTTTCTGATGATTTTTTTGGACAATGTGGTTCTTTGAGAGTCATTTCTTTGGCTAACAACCGCTTTTCAGGGCGAATTCCGGATAGTTTGAGCTCATGTGTGAGTTTAGTTTCTGTTAACTTGTCATCGAATCAGTTTTCGGGTTCTTTACCTTCTTCGATTTGGTCTTTCCTCGAGCTTCGGTCACTGGATTTGTCTGATAATAGGCTGGTGGGTGAAATTCCGATGAAAATCGAGGCTTTGCGTTATCTGCAGAGTCTTAACTTGAGGAAGAATGAGTTTTCTGGAGTGATTCCTGATGGTATTGGGAGCTGCTTGCTTTTGAGGTCCATTGATATTAGTGGCAATTCATTCTCTGGGAATCTTCCTGAGAGTATGCAGAAACTTACTTTGTGTAGTAATCTAATTTTAAGCAGGAATTTATTGGGAGGACAAGTTCCTGAGTGGATTGGAGAAATGAAAAGCCTTGAAATTCTTGACTTTTCTGGGAATAGATTTGTTGGCAATATTCCAACCAGGATAGGAAATCTTCAATATTTGAAAGTGTTGAATTTCTCTTTCAATGGTTTTACTGATAGCTTTCCAGAGTCTGTGATGAACTGCCAAAACCTTTTGGCTATAGATTTCAGCCATAATTCCATCACGGGTAATCTTCCGGCATCACTTTTACGGATCGAACAAAGTAGAAGCGTTGATGATCGCTTTTCATTAGCAGGAAAGGCAGTTCAAAATCTTCAAGTTCTTGATTTGTCTGACAATAGAATTTCTGGTGGAATTACATCTGCAATTGGGGATTTAGGCAGGCTGCAGTTTTTGAACCTTTCTCGAAATTCTATCGTTGGTCCTATTCCAGAAACCATTGGAGATTTGAATGCTTTGTGTAGTCTTGATTTGAGCAGAAATCAGTTGAATGGAAGCATCCCAAAGGCGATTGGAGGAGCGGTGTCTTTAATGGAACTGAGGCTGGAGGAGAATTTTCTGAGTGGTGAAATCCCTACTTCAATTGGGAACTGTTCTTCGCTTACAACTTTGTTCATAGCTCATAATAATTTATCTGGCCCGATACCAGCAGCGCTAGCGAAAGCTTCTGATCTCCAAAATGTAGACTTATCCTTTAACAACCTCAATGGAACCCTTCCCAAGCAGTTGTCTAACCTTCCCAACCTTCTCTTGTTTAATATTTCTCACAATAGCCTCCAGGGTGAGCTGCCTGCTGGTGGGTTCTTTAACACTATTTCCCCTTCATCTGTTGCTGGCAACCCATCCCTCTGTGGCTCTGTAGTTAACAAGTCTTGTCCTTCTGTCCTTCCAAAACCCATTGTTCTCGATCCCAACTCTACTTCCGATTCCATGTCCAGTTCCAGTTCACTGCCCCAAAGTATTGGTCATAGAAGAAAGATCCTCAGCATATCAGCATTGATTGCCATTGGTGCAGCTGCTCTCATTATCATTGGTGTTATTTCCATCACCATCCTCAACCTCCGTGTTCAATCACCCACATCGTCTTCTGCGGCTGCACTTGCATTATCTATCGGGGATGATTTCAGTCGTTCCTCCACCACAGATGCAAATTCCGGCAAGCTTGTGGTGTTCTCAGGAGAACTTGACTTTAGCACAGGAACACATGCACTGCTCAACAAGAACTGTGAGCTCGGGCGTGGTGGGTTTGGAGCTGTGTACCATTCTGTTCTGAGAGATGGGCATCCAGTTGCAATCAAGAAGCTCACAGTTTCTAGCCTTGTCAAATCTCAAGAGGATTTTGAGAGGGAGGTTAAGAAATTTGGGAAAGTCGGGCATCGAAATCTTGTGGCACTCGAAGGATATTATTGGACGCCCTCACTACAACTCCTCATATATGAGTTTGTCTCTGGAGGTAGCTTGTATAATCTTCTCCAACAAGCATCTGATGACCATTTCCTCTCATGGAATGAGAGATTCAACATAATTCTTGGAACTGCAAAAGGCCTGGCTCACTTGCATCAAGCAAACATAATCCATTACAATATAAAATCAAGCAACATTCTCATTGATTGCAATCGTCAACCTAAGGTTGGGGATTACGGTCTGGCAAGATTGCTTCCAATGTTAGATCGGTACGTTTTAAGTAGCAAGATTCAGAGCGCACTCGGTTATATGGCACCTGAATTTGCTTGCAGTACGGTGAAGATAACCGAGAAATGTGATGTGTATGGCTTCGGGGTCTTGATGTTGGAGATAGTTACTGGGAAGAGACCTGTAGAGTACATGGAAGACGATGTTGCAGTCCTTTGCGATATGGTCAGAGGAGCAGTAGAAGAAGGAAAGGCCGAAGAATGCATCGATACGAGGCTGAGGGGAAATTTCCCAGTAGAAGAGGCAATTCCAGTATTGAAATTAGGCTTGATCTGCACCTCCCATGTGCCATCAAACCGCCCCGACATGAGAGAGCTGGTTAAGATATTGGAGATGATCAGATGCCCTTCTGAATTACAAGAGGAGTTGGGATGA 2916 42.87 MPALLNMKTLLLLQLLLFVFFILARVRTVRCLNLSLNDDVLGLIVFKADIHDPKQNLATWNEDDDTPCNWNGVKCSPQSHRVIELKLDGFFLSGRLGRGLFRLQFLRKLSISNNNLTGSITPSIARIDNLQVIDFSGNAFSGVVSDDFFGQCGSLRVISLANNRFSGRIPDSLSSCVSLVSVNLSSNQFSGSLPSSIWSFLELRSLDLSDNRLVGEIPMKIEALRYLQSLNLRKNEFSGVIPDGIGSCLLLRSIDISGNSFSGNLPESMQKLTLCSNLILSRNLLGGQVPEWIGEMKSLEILDFSGNRFVGNIPTRIGNLQYLKVLNFSFNGFTDSFPESVMNCQNLLAIDFSHNSITGNLPASLLRIEQSRSVDDRFSLAGKAVQNLQVLDLSDNRISGGITSAIGDLGRLQFLNLSRNSIVGPIPETIGDLNALCSLDLSRNQLNGSIPKAIGGAVSLMELRLEENFLSGEIPTSIGNCSSLTTLFIAHNNLSGPIPAALAKASDLQNVDLSFNNLNGTLPKQLSNLPNLLLFNISHNSLQGELPAGGFFNTISPSSVAGNPSLCGSVVNKSCPSVLPKPIVLDPNSTSDSMSSSSSLPQSIGHRRKILSISALIAIGAAALIIIGVISITILNLRVQSPTSSSAAALALSIGDDFSRSSTTDANSGKLVVFSGELDFSTGTHALLNKNCELGRGGFGAVYHSVLRDGHPVAIKKLTVSSLVKSQEDFEREVKKFGKVGHRNLVALEGYYWTPSLQLLIYEFVSGGSLYNLLQQASDDHFLSWNERFNIILGTAKGLAHLHQANIIHYNIKSSNILIDCNRQPKVGDYGLARLLPMLDRYVLSSKIQSALGYMAPEFACSTVKITEKCDVYGFGVLMLEIVTGKRPVEYMEDDVAVLCDMVRGAVEEGKAEECIDTRLRGNFPVEEAIPVLKLGLICTSHVPSNRPDMRELVKILEMIRCPSELQEELG 971
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 44202653 44206091 + evm.model.ptg000006l.1055 HCH1g0270 538289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0270 971 Gene3D Phosphorylase Kinase; domain 1 663 764 - -
HCH1g0270 971 Pfam Leucine rich repeat N-terminal domain 36 76 IPR013210 -
HCH1g0270 971 Gene3D Ribonuclease Inhibitor 292 380 IPR032675 -
HCH1g0270 971 SUPERFAMILY L domain-like 52 365 - -
HCH1g0270 971 FunFam Leucine-rich repeat receptor-like protein kinase 36 194 - -
HCH1g0270 971 Gene3D Ribonuclease Inhibitor 37 193 IPR032675 -
HCH1g0270 971 Gene3D Ribonuclease Inhibitor 194 291 IPR032675 -
HCH1g0270 971 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 765 966 - -
HCH1g0270 971 Pfam Protein tyrosine and serine/threonine kinase 690 956 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH1g0270 971 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 19 962 IPR050647 -
HCH1g0270 971 ProSitePatterns Protein kinases ATP-binding region signature. 694 717 IPR017441 GO:0005524(InterPro)
HCH1g0270 971 Gene3D Transferase(Phosphotransferase) domain 1 765 969 - -
HCH1g0270 971 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 316 579 - -
HCH1g0270 971 FunFam Inactive leucine-rich repeat receptor-like protein kinase 195 291 - -
HCH1g0270 971 Pfam Leucine Rich Repeat 508 529 IPR001611 GO:0005515(InterPro)
HCH1g0270 971 Pfam Leucine Rich Repeat 298 320 IPR001611 GO:0005515(InterPro)
HCH1g0270 971 Pfam Leucine Rich Repeat 459 481 IPR001611 GO:0005515(InterPro)
HCH1g0270 971 Pfam Leucine Rich Repeat 436 456 IPR001611 GO:0005515(InterPro)
HCH1g0270 971 Pfam Leucine Rich Repeat 411 433 IPR001611 GO:0005515(InterPro)
HCH1g0270 971 Pfam Leucine Rich Repeat 387 409 IPR001611 GO:0005515(InterPro)
HCH1g0270 971 Pfam Leucine Rich Repeat 203 221 IPR001611 GO:0005515(InterPro)
HCH1g0270 971 Pfam Leucine Rich Repeat 227 248 IPR001611 GO:0005515(InterPro)
HCH1g0270 971 Pfam Leucine Rich Repeat 251 272 IPR001611 GO:0005515(InterPro)
HCH1g0270 971 Pfam Leucine Rich Repeat 483 503 IPR001611 GO:0005515(InterPro)
HCH1g0270 971 Pfam Leucine Rich Repeat 106 125 IPR001611 GO:0005515(InterPro)
HCH1g0270 971 Pfam Leucine Rich Repeat 323 344 IPR001611 GO:0005515(InterPro)
HCH1g0270 971 ProSiteProfiles Protein kinase domain profile. 688 960 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH1g0270 971 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 682 764 - -
HCH1g0270 971 Pfam Leucine rich repeat 129 189 IPR001611 GO:0005515(InterPro)
HCH1g0270 971 SUPERFAMILY RNI-like 319 554 - -
HCH1g0270 971 CDD STKc_IRAK 694 958 - -
HCH1g0270 971 SUPERFAMILY Protein kinase-like (PK-like) 692 961 IPR011009 -
HCH1g0270 971 SMART LRR_typ_2 127 150 IPR003591 -
HCH1g0270 971 SMART LRR_typ_2 433 457 IPR003591 -
HCH1g0270 971 SMART LRR_typ_2 296 320 IPR003591 -
HCH1g0270 971 SMART LRR_typ_2 529 553 IPR003591 -
HCH1g0270 971 SMART LRR_typ_2 224 248 IPR003591 -
HCH1g0270 971 SMART LRR_typ_2 385 409 IPR003591 -
HCH1g0270 971 Gene3D Ribonuclease Inhibitor 383 578 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0019 HCH-Chr11:678996 HCH1g0270 HCH-Chr1:44202653 6.40E-26 dispersed
HCH1g0270 HCH-Chr1:44202653 HCH7g0902 HCH-Chr7:34129620 5.20E-28 dispersed
HCH1g0270 HCH-Chr1:44202653 HCH1g0272 HCH-Chr1:44280014 1.30E-100 proximal
HCH1g0270 HCH-Chr1:44202653 HCH1g0271 HCH-Chr1:44278625 7.40E-208 tandem
HCH1g0270 HCH-Chr1:44202653 HCH13g0600 HCH-Chr13:4595342 4.20E-219 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81266 PF07714 PK_Tyr_Ser-Thr 1.20E-41 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0270 - - - 0.0