Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0271 ATGTCCAGTTCCAGTTCACTGCCCCAAAGTATTGGTCATAGAAGAAAGATCCTCAGCATATCAGCATTGATTGCCATTGGTGCAGCTGCTCTCATTATCATTGGTGTTATTTCCATCACCATCCTCAACCTCCGTGTTCAATCACCCACATCGTCTTCTGTGGCTACACTTGCATTATCTATCGGGGATGATTTCAGTCGTTCCTCCACCACTGATGCAAATTCCGGCAAGCTTATGGTGTTCTCAGGAGAACTTGACTTTAGCACAGGAACACATGCACTGCTCAACAAGAACTGTGAGCTCGGGCGTGGTGGGTTTGGAGCTGTGTACCATTCTGTTCTGAGAGATGGGCATCCAGTTGCAATCAAGAAGCTCACAGTTTCTAGCCTTGTCAAATCTCAAGAGGATTTTGAGAGGGAGGTTAAGAAATTTGGGAAAGTCGGGCATCGAAATGTTGTGGCACTCGAAGGATATTATTGGACGCCCTCACTACAACTCCTCATATATGAGTTTGTCTCTGAAGGTAGCTTGTATAATCTTCTCCAACAAGCATCTGATGACCATTTCCTCTCATGGAATAAGAGATTCAACATAATTCTTGGAACTGCAAAAGGCCTGGCTCACTTGCATCAAGCAAACATAATCCATTACAATATAAAATCAAGCAACATTCTCATCGATTGCAATCGTCAACCTAAGGTCGGGGATTACGGTCTGGCAAGATTGCTTCCAATGTTAGATCGGTACGTTTTAAGTAGCAAGATTCAGAGCGCACTCGGTTATATGGCACCTGAATTTGCTTGCAGTACGGTGAAGATAACCGAGAAATGTGATGTGTATGGCTTCGGGGTCTTGATGTTGGAGATAGTTACTGGGAAGAGACCCGTAGAGTACATGGAAGACGATGTTGCAGTCCTTTGCGATATGGTCAGAGGAGCAGTAGAAGAAGGAAAGGCCGAAGAATGCTTCGATAAAAGGCTGAGGGGAAATTTCCCAGTAGAAGAGGCAATTCCAGTATTGAAATTAGGCTTGATCTGCACCTCCCATGTGCCATCAAACCGCCCCGACATGAGAGAGCTGGTTAAGATATTGGAGATGATCAGATGCCCTTCTGAATTACAAGAGGAGTTGGGATGA 1137 44.85 MSSSSSLPQSIGHRRKILSISALIAIGAAALIIIGVISITILNLRVQSPTSSSVATLALSIGDDFSRSSTTDANSGKLMVFSGELDFSTGTHALLNKNCELGRGGFGAVYHSVLRDGHPVAIKKLTVSSLVKSQEDFEREVKKFGKVGHRNVVALEGYYWTPSLQLLIYEFVSEGSLYNLLQQASDDHFLSWNKRFNIILGTAKGLAHLHQANIIHYNIKSSNILIDCNRQPKVGDYGLARLLPMLDRYVLSSKIQSALGYMAPEFACSTVKITEKCDVYGFGVLMLEIVTGKRPVEYMEDDVAVLCDMVRGAVEEGKAEECFDKRLRGNFPVEEAIPVLKLGLICTSHVPSNRPDMRELVKILEMIRCPSELQEELG 378
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 44278625 44279761 - evm.model.ptg000006l.1054 HCH1g0271 538290
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0271 378 ProSitePatterns Protein kinases ATP-binding region signature. 101 124 IPR017441 GO:0005524(InterPro)
HCH1g0271 378 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 89 171 - -
HCH1g0271 378 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 172 373 - -
HCH1g0271 378 Gene3D Phosphorylase Kinase; domain 1 66 171 - -
HCH1g0271 378 ProSiteProfiles Protein kinase domain profile. 95 367 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH1g0271 378 Pfam Protein tyrosine and serine/threonine kinase 97 363 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH1g0271 378 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 90 365 IPR052059 GO:0004674(PANTHER)|GO:0006468(PANTHER)
HCH1g0271 378 Gene3D Transferase(Phosphotransferase) domain 1 172 376 - -
HCH1g0271 378 SUPERFAMILY Protein kinase-like (PK-like) 99 368 IPR011009 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0600 HCH-Chr13:4595342 HCH1g0271 HCH-Chr1:44278625 1.70E-167 dispersed
HCH1g0271 HCH-Chr1:44278625 HCH7g0902 HCH-Chr7:34129620 1.60E-86 dispersed
HCH1g0270 HCH-Chr1:44202653 HCH1g0271 HCH-Chr1:44278625 7.40E-208 tandem
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81267 PF07714 PK_Tyr_Ser-Thr 1.20E-42 CL0016 HCH PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0271 - - - 0.0