Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH1g0271 | ATGTCCAGTTCCAGTTCACTGCCCCAAAGTATTGGTCATAGAAGAAAGATCCTCAGCATATCAGCATTGATTGCCATTGGTGCAGCTGCTCTCATTATCATTGGTGTTATTTCCATCACCATCCTCAACCTCCGTGTTCAATCACCCACATCGTCTTCTGTGGCTACACTTGCATTATCTATCGGGGATGATTTCAGTCGTTCCTCCACCACTGATGCAAATTCCGGCAAGCTTATGGTGTTCTCAGGAGAACTTGACTTTAGCACAGGAACACATGCACTGCTCAACAAGAACTGTGAGCTCGGGCGTGGTGGGTTTGGAGCTGTGTACCATTCTGTTCTGAGAGATGGGCATCCAGTTGCAATCAAGAAGCTCACAGTTTCTAGCCTTGTCAAATCTCAAGAGGATTTTGAGAGGGAGGTTAAGAAATTTGGGAAAGTCGGGCATCGAAATGTTGTGGCACTCGAAGGATATTATTGGACGCCCTCACTACAACTCCTCATATATGAGTTTGTCTCTGAAGGTAGCTTGTATAATCTTCTCCAACAAGCATCTGATGACCATTTCCTCTCATGGAATAAGAGATTCAACATAATTCTTGGAACTGCAAAAGGCCTGGCTCACTTGCATCAAGCAAACATAATCCATTACAATATAAAATCAAGCAACATTCTCATCGATTGCAATCGTCAACCTAAGGTCGGGGATTACGGTCTGGCAAGATTGCTTCCAATGTTAGATCGGTACGTTTTAAGTAGCAAGATTCAGAGCGCACTCGGTTATATGGCACCTGAATTTGCTTGCAGTACGGTGAAGATAACCGAGAAATGTGATGTGTATGGCTTCGGGGTCTTGATGTTGGAGATAGTTACTGGGAAGAGACCCGTAGAGTACATGGAAGACGATGTTGCAGTCCTTTGCGATATGGTCAGAGGAGCAGTAGAAGAAGGAAAGGCCGAAGAATGCTTCGATAAAAGGCTGAGGGGAAATTTCCCAGTAGAAGAGGCAATTCCAGTATTGAAATTAGGCTTGATCTGCACCTCCCATGTGCCATCAAACCGCCCCGACATGAGAGAGCTGGTTAAGATATTGGAGATGATCAGATGCCCTTCTGAATTACAAGAGGAGTTGGGATGA | 1137 | 44.85 | MSSSSSLPQSIGHRRKILSISALIAIGAAALIIIGVISITILNLRVQSPTSSSVATLALSIGDDFSRSSTTDANSGKLMVFSGELDFSTGTHALLNKNCELGRGGFGAVYHSVLRDGHPVAIKKLTVSSLVKSQEDFEREVKKFGKVGHRNVVALEGYYWTPSLQLLIYEFVSEGSLYNLLQQASDDHFLSWNKRFNIILGTAKGLAHLHQANIIHYNIKSSNILIDCNRQPKVGDYGLARLLPMLDRYVLSSKIQSALGYMAPEFACSTVKITEKCDVYGFGVLMLEIVTGKRPVEYMEDDVAVLCDMVRGAVEEGKAEECFDKRLRGNFPVEEAIPVLKLGLICTSHVPSNRPDMRELVKILEMIRCPSELQEELG | 378 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 44278625 | 44279761 | - | evm.model.ptg000006l.1054 | HCH1g0271 | 538290 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH1g0271 | 378 | ProSitePatterns | Protein kinases ATP-binding region signature. | 101 | 124 | IPR017441 | GO:0005524(InterPro) | |
HCH1g0271 | 378 | FunFam | probable LRR receptor-like serine/threonine-protein kinase IRK | 89 | 171 | - | - | |
HCH1g0271 | 378 | FunFam | probable LRR receptor-like serine/threonine-protein kinase IRK | 172 | 373 | - | - | |
HCH1g0271 | 378 | Gene3D | Phosphorylase Kinase; domain 1 | 66 | 171 | - | - | |
HCH1g0271 | 378 | ProSiteProfiles | Protein kinase domain profile. | 95 | 367 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH1g0271 | 378 | Pfam | Protein tyrosine and serine/threonine kinase | 97 | 363 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
HCH1g0271 | 378 | PANTHER | CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 | 90 | 365 | IPR052059 | GO:0004674(PANTHER)|GO:0006468(PANTHER) | |
HCH1g0271 | 378 | Gene3D | Transferase(Phosphotransferase) domain 1 | 172 | 376 | - | - | |
HCH1g0271 | 378 | SUPERFAMILY | Protein kinase-like (PK-like) | 99 | 368 | IPR011009 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH13g0600 | HCH-Chr13:4595342 | HCH1g0271 | HCH-Chr1:44278625 | 1.70E-167 | dispersed | |
HCH1g0271 | HCH-Chr1:44278625 | HCH7g0902 | HCH-Chr7:34129620 | 1.60E-86 | dispersed | |
HCH1g0270 | HCH-Chr1:44202653 | HCH1g0271 | HCH-Chr1:44278625 | 7.40E-208 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
81267 | PF07714 | PK_Tyr_Ser-Thr | 1.20E-42 | CL0016 | HCH | PK |
Pathway information
