Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0278 ATGTCTTCGGAAGAAATGAACGGCCTGAATTCCCAACTAGTCTTCCAAGATGAAACCATGCCTTTCAATTGTTCTTCTTCTACTCCTCAACGCCGTGTTCCTGACCCATGTCCCAAAACCCGTGAACTCTGCGGTTTCATGGACGATAAACTCTTTTCCATTGACCGCAATCGATTCTTTGCTCATCAAGGTACTGATTTCAGGCGCACTGTTTTCAATGATGCTCGGAATTGGACTACTAGAACAGCTAGTGGCAAAGCATCAGATGAAGAAGATGATGATGATGATGACGATGACGACGATGATGACGGCGATGATGTTGAGGGACTTGTCGGTATTGATGATGTTAATAAATCCGCCAATAATAGCAACAGTGATAGGAATGATCACAGTAGTGTTGGTGTAAAAGATGGATTGAATAAAATGGGAAATGGGAAATCTAAGCACCATATCTCTTTGGGGGGAACTCTGTTAGTAGGATCGGGTAGAGAGGTGTTGGTTAAGGATGGTATGGTTGGACCATTGGGTAGTAATACAGAAGCAAACTCGAGTGAGAATCGTCCGCAAGGGCTGGGGAATTATCCTAATGCGGTTACGATTGCAGAACCTGACGGTGATGCGTATTATTCGCAGTATTTGCAAGGCAATGAGGGGTCGGTTTCTGGGCAGAAGGATTTGGGTTTGGAAAACGGATGCGGATTTAATGGGAGAAGGGATGTTACTGTTTCGTGTGAGTCCGGAGAGTCTTTGAGAACAATTCTCTCTGACCCTGTGACGGGTGCTCTCATGGACGATGCAATGATATTACCTTGTGGGCATTCCTTTGGTATTGGTGGAATACAACATATTCTTAGAGTAAAAACATGCTACACGTGTTCTCAGTCAGTTTCTGAAGACTCCATCGCTCAAAATTTATCTCTTCAAGCTGCAGTCCAGGCATTCCGCCGGGAAGAACAATTATTGTTTTATCGCTCACCGAAAAGGAGAAGAGAGAGGTTTGACCAGGACAAGGGTGGTTATGGTGATTTAACTCTAATGGATTCTCCAAGGGGTAGAGGTGTTCAGTTTCCATTTGCCGTGACGGATCGTGTAATTATAAAGGGGAATAAGAGGACACCACAGCGTTTTGTGGGACGTGAGGCCGTTGTGACAACACAATGCTTGAATGGATGGTATGTGGTGAAGACACTGGATAATGCAGAGAGTGTAAAATTGCAGTATCGATCTCTTGCCAAGGTTCCAAACGACGTTGCATCAAAATCAATAACAAGGAAGGTGGTGCCGAATTGGCTTTAG 1296 44.52 MSSEEMNGLNSQLVFQDETMPFNCSSSTPQRRVPDPCPKTRELCGFMDDKLFSIDRNRFFAHQGTDFRRTVFNDARNWTTRTASGKASDEEDDDDDDDDDDDDGDDVEGLVGIDDVNKSANNSNSDRNDHSSVGVKDGLNKMGNGKSKHHISLGGTLLVGSGREVLVKDGMVGPLGSNTEANSSENRPQGLGNYPNAVTIAEPDGDAYYSQYLQGNEGSVSGQKDLGLENGCGFNGRRDVTVSCESGESLRTILSDPVTGALMDDAMILPCGHSFGIGGIQHILRVKTCYTCSQSVSEDSIAQNLSLQAAVQAFRREEQLLFYRSPKRRRERFDQDKGGYGDLTLMDSPRGRGVQFPFAVTDRVIIKGNKRTPQRFVGREAVVTTQCLNGWYVVKTLDNAESVKLQYRSLAKVPNDVASKSITRKVVPNWL 431
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 44682983 44693385 - evm.model.ptg000006l.1047 HCH1g0278 538297

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0278 431 ProSiteProfiles U-box domain profile. 249 321 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
HCH1g0278 431 SUPERFAMILY RING/U-box 253 317 - -
HCH1g0278 431 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 248 320 IPR013083 -
HCH1g0278 431 MobiDBLite consensus disorder prediction 89 110 - -
HCH1g0278 431 MobiDBLite consensus disorder prediction 81 147 - -
HCH1g0278 431 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 7 423 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0278 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0085 HCH-Chr1:7164445 HCH1g0278 HCH-Chr1:44682983 2.10E-37 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH10g0548 . 2 736 Plant U-box Gene Family AT5G57035 51.3 5.4e-217 751.1
HCH1g0278 . 197 431 Plant U-box Gene Family AT5G05230 59.8 1.4e-71 266.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004883 1 1 1 1 1 1 2 1 1 2 1 1 2 2 2 0 1 2 1 1 2 1 1 1 1 1 1 2 4 1 40