Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0278 ATGTCTTCGGAAGAAATGAACGGCCTGAATTCCCAACTAGTCTTCCAAGATGAAACCATGCCTTTCAATTGTTCTTCTTCTACTCCTCAACGCCGTGTTCCTGACCCATGTCCCAAAACCCGTGAACTCTGCGGTTTCATGGACGATAAACTCTTTTCCATTGACCGCAATCGATTCTTTGCTCATCAAGGTACTGATTTCAGGCGCACTGTTTTCAATGATGCTCGGAATTGGACTACTAGAACAGCTAGTGGCAAAGCATCAGATGAAGAAGATGATGATGATGATGACGATGACGACGATGATGACGGCGATGATGTTGAGGGACTTGTCGGTATTGATGATGTTAATAAATCCGCCAATAATAGCAACAGTGATAGGAATGATCACAGTAGTGTTGGTGTAAAAGATGGATTGAATAAAATGGGAAATGGGAAATCTAAGCACCATATCTCTTTGGGGGGAACTCTGTTAGTAGGATCGGGTAGAGAGGTGTTGGTTAAGGATGGTATGGTTGGACCATTGGGTAGTAATACAGAAGCAAACTCGAGTGAGAATCGTCCGCAAGGGCTGGGGAATTATCCTAATGCGGTTACGATTGCAGAACCTGACGGTGATGCGTATTATTCGCAGTATTTGCAAGGCAATGAGGGGTCGGTTTCTGGGCAGAAGGATTTGGGTTTGGAAAACGGATGCGGATTTAATGGGAGAAGGGATGTTACTGTTTCGTGTGAGTCCGGAGAGTCTTTGAGAACAATTCTCTCTGACCCTGTGACGGGTGCTCTCATGGACGATGCAATGATATTACCTTGTGGGCATTCCTTTGGTATTGGTGGAATACAACATATTCTTAGAGTAAAAACATGCTACACGTGTTCTCAGTCAGTTTCTGAAGACTCCATCGCTCAAAATTTATCTCTTCAAGCTGCAGTCCAGGCATTCCGCCGGGAAGAACAATTATTGTTTTATCGCTCACCGAAAAGGAGAAGAGAGAGGTTTGACCAGGACAAGGGTGGTTATGGTGATTTAACTCTAATGGATTCTCCAAGGGGTAGAGGTGTTCAGTTTCCATTTGCCGTGACGGATCGTGTAATTATAAAGGGGAATAAGAGGACACCACAGCGTTTTGTGGGACGTGAGGCCGTTGTGACAACACAATGCTTGAATGGATGGTATGTGGTGAAGACACTGGATAATGCAGAGAGTGTAAAATTGCAGTATCGATCTCTTGCCAAGGTTCCAAACGACGTTGCATCAAAATCAATAACAAGGAAGGTGGTGCCGAATTGGCTTTAG 1296 44.52 MSSEEMNGLNSQLVFQDETMPFNCSSSTPQRRVPDPCPKTRELCGFMDDKLFSIDRNRFFAHQGTDFRRTVFNDARNWTTRTASGKASDEEDDDDDDDDDDDDGDDVEGLVGIDDVNKSANNSNSDRNDHSSVGVKDGLNKMGNGKSKHHISLGGTLLVGSGREVLVKDGMVGPLGSNTEANSSENRPQGLGNYPNAVTIAEPDGDAYYSQYLQGNEGSVSGQKDLGLENGCGFNGRRDVTVSCESGESLRTILSDPVTGALMDDAMILPCGHSFGIGGIQHILRVKTCYTCSQSVSEDSIAQNLSLQAAVQAFRREEQLLFYRSPKRRRERFDQDKGGYGDLTLMDSPRGRGVQFPFAVTDRVIIKGNKRTPQRFVGREAVVTTQCLNGWYVVKTLDNAESVKLQYRSLAKVPNDVASKSITRKVVPNWL 431
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 44682983 44693385 - evm.model.ptg000006l.1047 HCH1g0278 538297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0278 431 ProSiteProfiles U-box domain profile. 249 321 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
HCH1g0278 431 SUPERFAMILY RING/U-box 253 317 - -
HCH1g0278 431 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 248 320 IPR013083 -
HCH1g0278 431 MobiDBLite consensus disorder prediction 89 110 - -
HCH1g0278 431 MobiDBLite consensus disorder prediction 81 147 - -
HCH1g0278 431 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 7 423 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0085 HCH-Chr1:7164445 HCH1g0278 HCH-Chr1:44682983 2.10E-37 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0278 - - - 0.0