Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0287 ATGGAAATGCAGCATCAGCAGCAGCAAGATCTATCGATTCCCAATAATCAAACCCAAATCTCAAATTCTCCATTGCCGCCTCCTCCAATGGCTTCTTCCTCTTCAAACCCATCTCTCCCATTCCGTGGTTTCTACCATAGACGAGCCCATTCCGAAGTCCATTTCCGGATTCCTGATGATATTGATTTATCCTTTGATGCACCTTCTTCTGGATTTGAAGATCTGGGATTTGAAGATGATCTTATATGCACTTTCATGGATATCGAAAAGATCGGATCTAAACCTGAAGCTTCTGAAAATGTTGAAGGAAATACAATCTCTAGGCCCAGACATCGTCATAGTAATTCAGCGGATGAATCTTCGTTGTTTGATTCTATTGAAGCTAAGAAAGCTATGGATCCTGATAAACTTGCTGAATTATGGACCGTTGATCCTAAACGAGCTAAAAGGATTTTGGCAAATAGACAGTCTGCTGCTCGTTCGAAAGAGAGGAAAGCTCGGTACATAATGGAGCTTGAGAGAAAAGTTCAAAGTCTTCAGACAGAAGCAACAACCCTTTCTGCACAGCTTACATTGTATCAGAGAGATACCACAGGGTTGTCAACTGAAAACACAGAGCTTAAACTTCGTTTACAAGCTATGGAACAACAAGCTCATTTACGCGATGCTCTAAATGAAGCATTGAAAAAAGAAGTTGAGAGGCTCAAGATGGCGACTGGAGAAGTAATGACAGCTACAGAATCATATAATTTTGGAATGCCTCAAATTTCATATCCTCAATCATGCTTTTCCCATCAGCCGCAACCCGGGCAGCATAACTCTTTTCGGATGCAAAGGCCCCAAGTTCTTCCATTCCAGCCTAATCTATCAAGCCCTCATCAACCTATGTTTATTGCATCCCACCAGCCACATGCCTTGACAGAAATGTTTCAGCAAGATCCAATTAGCCAATTGCAAGGTCTCGATATCGGTAGCCGAGGTGCAGAAATAAAGCCTGAAGGCTCCTCTATATCCATCAGTGAAAGTAGCAGCACATTTTAA 1041 42.07 MEMQHQQQQDLSIPNNQTQISNSPLPPPPMASSSSNPSLPFRGFYHRRAHSEVHFRIPDDIDLSFDAPSSGFEDLGFEDDLICTFMDIEKIGSKPEASENVEGNTISRPRHRHSNSADESSLFDSIEAKKAMDPDKLAELWTVDPKRAKRILANRQSAARSKERKARYIMELERKVQSLQTEATTLSAQLTLYQRDTTGLSTENTELKLRLQAMEQQAHLRDALNEALKKEVERLKMATGEVMTATESYNFGMPQISYPQSCFSHQPQPGQHNSFRMQRPQVLPFQPNLSSPHQPMFIASHQPHALTEMFQQDPISQLQGLDIGSRGAEIKPEGSSISISESSSTF 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 45381096 45390585 + evm.model.ptg000006l.1038 HCH1g0287 538306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0287 346 MobiDBLite consensus disorder prediction 1 38 - -
HCH1g0287 346 CDD bZIP_plant_RF2 147 196 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH1g0287 346 MobiDBLite consensus disorder prediction 1 20 - -
HCH1g0287 346 Coils Coil 221 241 - -
HCH1g0287 346 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 144 207 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH1g0287 346 MobiDBLite consensus disorder prediction 324 346 - -
HCH1g0287 346 SUPERFAMILY Leucine zipper domain 146 197 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH1g0287 346 Pfam bZIP transcription factor 146 201 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH1g0287 346 SMART brlzneu 142 206 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH1g0287 346 MobiDBLite consensus disorder prediction 105 121 - -
HCH1g0287 346 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 27 313 - GO:0003700(PANTHER)|GO:0005634(PANTHER)
HCH1g0287 346 Gene3D - 146 196 - -
HCH1g0287 346 Coils Coil 162 189 - -
HCH1g0287 346 FunFam probable transcription factor PosF21 145 198 - -
HCH1g0287 346 MobiDBLite consensus disorder prediction 96 121 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0052 HCH-Chr10:437899 HCH1g0287 HCH-Chr1:45381096 2.90E-47 dispersed
HCH12g1439 HCH-Chr12:38690895 HCH1g0287 HCH-Chr1:45381096 1.80E-41 dispersed
HCH1g0287 HCH-Chr1:45381096 HCH2g0977 HCH-Chr2:53076680 1.50E-70 dispersed
HCH1g0287 HCH-Chr1:45381096 HCH13g0227 HCH-Chr13:1497514 1.30E-42 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33039 PF00170 bZIP_1 1.50E-08 CL0018 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0287 - - - 0.0