Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0288 ATGGTTGCTTCTTCAGGATTATTCTCTTCTATCTTTCTTCTCCTGTTTGTGTTCAATTTATGTATTCATGGCTCTTCTGCTGACTATGGGTGGCAGAGCGGTCACGCCACCTTCTACGGCGGCAGTGATGCGTCCGGCACCATGGGGGGAGCTTGTGGGTACGGAAATTTATATAGCCAAGGGTACGGAACAAACACAGTAGCATTAAGCACAGCTCTATTTGACAATGGCTTAAGCTGTGGGGCATGTTTTGAAATGACATGTACCAATGATCCCAAATGGTGCCTTCCTGCCACCATCCGAGTCACTGCCACAAATTTTTGCCCTCCAAACTTTGCTTTGCCTAATAACAATGGCGGATGGTGCAATCCTCCTCTCCAGCACTTTGATATGGCCGAGCCTGCCTTCTTGCAGATTGCTCAATATCGTGCTGGAATTGTTCCCGTCTCTTTTAGAAGAGTCCCCTGTATGAAGAAAGGAGGAGTAAGATTCACTATCAATGGCCACTCTTACTTCAACTTAGTTTTGATCACAAACGTCGGTGGCGCGGGCGACGTCCACGCCGTGTCGATCAAAGGTTCGAAAACCGGGTGGCAAGCCATGTCAAGGAATTGGGGACAGAACTGGCAAAGCAACAACTACATGAACGGCCAAAGCCTCTCTTTCCAAGTCACTCTCAGCGACGGCAAAACCCTCACCAACTACAACCTTGCCCCCTCTAACTGGCAGTTTGGCCAAACTTACGAGGGTGGCCAATTCTAG 762 48.82 MVASSGLFSSIFLLLFVFNLCIHGSSADYGWQSGHATFYGGSDASGTMGGACGYGNLYSQGYGTNTVALSTALFDNGLSCGACFEMTCTNDPKWCLPATIRVTATNFCPPNFALPNNNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPVSFRRVPCMKKGGVRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSKTGWQAMSRNWGQNWQSNNYMNGQSLSFQVTLSDGKTLTNYNLAPSNWQFGQTYEGGQF 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 45418363 45420776 + evm.model.ptg000006l.1037 HCH1g0288 538307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0288 253 FunFam Expansin 161 253 - -
HCH1g0288 253 Gene3D - 161 253 IPR036749 -
HCH1g0288 253 SUPERFAMILY Barwin-like endoglucanases 30 179 IPR036908 -
HCH1g0288 253 Pfam Expansin C-terminal domain 162 239 IPR007117 -
HCH1g0288 253 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 171 250 IPR007117 -
HCH1g0288 253 FunFam Expansin 20 157 - -
HCH1g0288 253 PRINTS Expansin signature 236 252 IPR002963 GO:0009664(InterPro)
HCH1g0288 253 PRINTS Expansin signature 160 172 IPR002963 GO:0009664(InterPro)
HCH1g0288 253 PRINTS Expansin signature 61 75 IPR002963 GO:0009664(InterPro)
HCH1g0288 253 PRINTS Expansin signature 119 136 IPR002963 GO:0009664(InterPro)
HCH1g0288 253 PRINTS Expansin signature 172 193 IPR002963 GO:0009664(InterPro)
HCH1g0288 253 PRINTS Expansin signature 136 149 IPR002963 GO:0009664(InterPro)
HCH1g0288 253 PRINTS Expansin signature 100 110 IPR002963 GO:0009664(InterPro)
HCH1g0288 253 PRINTS Expansin signature 207 228 IPR002963 GO:0009664(InterPro)
HCH1g0288 253 PRINTS Expansin signature 88 99 IPR002963 GO:0009664(InterPro)
HCH1g0288 253 SMART dpbb_1 66 151 IPR007112 -
HCH1g0288 253 SUPERFAMILY PHL pollen allergen 158 250 IPR036749 -
HCH1g0288 253 CDD DPBB_EXPA_N 30 156 - -
HCH1g0288 253 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 49 161 IPR007112 -
HCH1g0288 253 Gene3D - 19 157 IPR036908 -
HCH1g0288 253 PANTHER EXPANSIN-A15 14 253 IPR002963 GO:0009664(InterPro)
HCH1g0288 253 PRINTS Expansin/Lol pI family signature 48 66 IPR007118 GO:0005576(InterPro)
HCH1g0288 253 PRINTS Expansin/Lol pI family signature 144 160 IPR007118 GO:0005576(InterPro)
HCH1g0288 253 PRINTS Expansin/Lol pI family signature 236 250 IPR007118 GO:0005576(InterPro)
HCH1g0288 253 PRINTS Expansin/Lol pI family signature 30 45 IPR007118 GO:0005576(InterPro)
HCH1g0288 253 PRINTS Expansin/Lol pI family signature 70 88 IPR007118 GO:0005576(InterPro)
HCH1g0288 253 PRINTS Expansin/Lol pI family signature 198 212 IPR007118 GO:0005576(InterPro)
HCH1g0288 253 Pfam Lytic transglycolase 66 151 IPR009009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0492 HCH-Chr13:3426508 HCH1g0288 HCH-Chr1:45418363 4.60E-104 dispersed
HCH13g0724 HCH-Chr13:6105552 HCH1g0288 HCH-Chr1:45418363 4.20E-102 dispersed
HCH1g0288 HCH-Chr1:45418363 HCH4g0896 HCH-Chr4:5762602 3.20E-110 dispersed
HCH1g0288 HCH-Chr1:45418363 HCH13g0595 HCH-Chr13:4547515 1.60E-117 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0288 - - - 0.0