Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0295 ATGGATCTTGAACATGGAAAGTGTTGGGATGCTTCAAAGAAGGATTCTTGGAAGACTATTCTTGTCTTGGCTTATCAAAGCCTTGGTGTTGTCTATGGAGACCTTAGCATTTCTCCCCTATACGTTTACAGAAGCACTTTTGCTGAAGACATTCAGCATTCAGAAACCAATGAAGAAATCTATGGTGTTCTTTCATTTGTCTTCTGGACTCTTACTTTAGTCCCCCTTTTCAAATATGTCTTTGTGGTTCTCCGAGCTGATGATAATGGAGAAGGTGGGACTTTTGCTCTTTACTCTTTAATTTGCAGACATGCAAAAGTAAGCCTTCTTCCCAATAGACAGGTTGCAGATGAAGCATTATCCACTTATTTATTGGAACATCCTCTTGAGAAGAAGGGTTCAAAGGTTAAATCACTGCTTGAGAAGCACAGAGCTTTGCACACTGCCTTGCTCGTTCTGGTTCTTCTTGGAACTTGTATGGTAATTGGGGATGGGCTTCTCACTCCTGCTATTTCTGTTTTCTCAGCGGTTTCTGGCCTTGAGTTATCCATGTCTAAGGCACACCACGAATATGCAGTGGTTCCAATCACATGCTTCATCTTAGTTTGCCTATTTGCACTTCAACACTATGGAACTCATCGAGTGGGCTTCGTCTTTGCACCAGTTGTATTGACTTGGCTACTTTGCATCAGTACCCTTGGCATATACAATATTATACACTGGAATCCACATGTTTATCAAGCACTTTCTCCATATTACATGTTTAAGTTCTTGGAGAAGACAAGAAAGAGCGGATGGATGTCGTTGGGCGGTATACTGTTGTGCATAACAGGCTCAGAGGCAATGTTTGCTGATCTTGGCCACTTCTCATACACTGCAATACAGATTGCCTTCACCTTTATGGTGTATCCTGCACTTATATTGGCATATATGGGTCAAGCTGCGTACTTATCAATGAATCACCATACTAGCAGCAACATCGGTTTCTTTGTCTCTGTTCCAGAGAGTGTGAGATGGCCGGTGCTTACTATAGCTATTCTTGCTTCTGTCGTGGGAAGCCAAGCTATAATCAGTGGAACATTCTCTATTATCAACCAGAGCCAGTCTCTTGGGTGCTTCCCTAGAGTCAAGGTTGTTCATACCTCGGATAAGATACACGGCCAGATCTATATTCCTGAGATCAATTGGGTACTAATGATCCTTTGTGTTGCTGTGACCATTGGATTTAGAGATATAAAACACTTGGGAAATGCGTCTGGTCTAGCTGTAATGACTGTGATGCTAGTGACGACATGCCTTACTTCTTTGGTGATTGTCCTCTACTGGAACAAATCTCCTCTTTTAGCTCTCTGTTTCTTGATTTTCTTTGGGTCCATTGAATTACTCTACTTCTCAGCTTCACTCACCAAGTTCCGGGAGGGCGCTTGGCTGCCCATTCTCTTAGCCCTCTTCCTCATGACCATCATGTTTGTTTGGCACTACGCCACCATTAAAAAGTATGAATTTGACCTTCACAACAAGGTTTCGTTAGAATGGCTGCTCGCCTTGGGCCCAAGCTTGGGGATCGCTCGGGTACCTGGCATTGGGTTAGTGTTCACCGATCTCACCTCTGGAATCCCTGCCAACTTCTCCCGTTTTGTTACCAACCTCCCTGCCTTCCATCGCATCCTTGTCTTTGTGTGTATAAAGTCGGTCCCAGTTCCCTTTGTACCTCCGGCCGAGCGGTATCTTGTCGGCCGTGTTGGGCCAGCGGCTCATCGGTCCTACCGGTGCATCGTGCGCTATGGTTACCGAGATGTTCATCAGGATGTGGATTCATTTGAATCCGAATTAGTGAAAATGCTGGTGGATTTCATTCGCTATGACTGGCACAGAAAGCAGAGAACCAACTCATGCAGTGAGGATGATGCATCCGGGTCGAACGAATCAACGAGCGAGCGCCGGTTGGCTGTGATTGGGACAGTGGCATTTGCTGGTGTACCAGCTTATGAGATGGAGGAGACCGTGCAACCAGCAAGCGTATCAGTTGGGTTCCGAACTGTTGACAGCATCACTGATGTTATCGAGATGGAGCCGCATGGAGAAGAAAGAAGGGTGAGGTTTGCTGTCGACGACGAGTTCGAAAACGACTCACAAGCTGAGACGGAAGCCCTTTTGCATGAAGAGTTGGAGGATTTGGTATCAGCTCAGCAATCTGGTACGGCATTCATTCTTGGTCATTCACATGTTAGAGCAAAACAAGGATCATCTTTGATGAAGAAGTTGGCCATTAACTATGGATATAACTTTCTGAGGAGGAATTGCAGGGGACCAGATGTGGCACTTAAGGTGCCACCAGTGTCTCTTCTTGAGGTCGGCATGGTTTATGTTGTATAA 2376 45.29 MDLEHGKCWDASKKDSWKTILVLAYQSLGVVYGDLSISPLYVYRSTFAEDIQHSETNEEIYGVLSFVFWTLTLVPLFKYVFVVLRADDNGEGGTFALYSLICRHAKVSLLPNRQVADEALSTYLLEHPLEKKGSKVKSLLEKHRALHTALLVLVLLGTCMVIGDGLLTPAISVFSAVSGLELSMSKAHHEYAVVPITCFILVCLFALQHYGTHRVGFVFAPVVLTWLLCISTLGIYNIIHWNPHVYQALSPYYMFKFLEKTRKSGWMSLGGILLCITGSEAMFADLGHFSYTAIQIAFTFMVYPALILAYMGQAAYLSMNHHTSSNIGFFVSVPESVRWPVLTIAILASVVGSQAIISGTFSIINQSQSLGCFPRVKVVHTSDKIHGQIYIPEINWVLMILCVAVTIGFRDIKHLGNASGLAVMTVMLVTTCLTSLVIVLYWNKSPLLALCFLIFFGSIELLYFSASLTKFREGAWLPILLALFLMTIMFVWHYATIKKYEFDLHNKVSLEWLLALGPSLGIARVPGIGLVFTDLTSGIPANFSRFVTNLPAFHRILVFVCIKSVPVPFVPPAERYLVGRVGPAAHRSYRCIVRYGYRDVHQDVDSFESELVKMLVDFIRYDWHRKQRTNSCSEDDASGSNESTSERRLAVIGTVAFAGVPAYEMEETVQPASVSVGFRTVDSITDVIEMEPHGEERRVRFAVDDEFENDSQAETEALLHEELEDLVSAQQSGTAFILGHSHVRAKQGSSLMKKLAINYGYNFLRRNCRGPDVALKVPPVSLLEVGMVYVV 791
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 45994348 45998291 - evm.model.ptg000006l.1030 HCH1g0295 538314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0295 791 NCBIfam potassium uptake protein 23 790 IPR003855 GO:0015079(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
HCH1g0295 791 Pfam K+ potassium transporter integral membrane domain 23 514 IPR053951 -
HCH1g0295 791 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 14 790 IPR003855 GO:0005886(PANTHER)|GO:0006813(PANTHER)|GO:0015079(InterPro)|GO:0015079(PANTHER)|GO:0016020(InterPro)|GO:0016020(PANTHER)|GO:0071805(InterPro)
HCH1g0295 791 Pfam K+ potassium transporter C-terminal domain 526 789 IPR053952 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0295 HCH-Chr1:45994348 HCH9g0158 HCH-Chr9:943132 1.30E-290 dispersed
HCH1g0295 HCH-Chr1:45994348 HCH13g0589 HCH-Chr13:4513494 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0295 K03549 - csv:101211022 1445.64