Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0301 GAGAGATTTGATGAGATTTCTAAGAAGATAAAGAGGGAGACGGATGCATCAAATCCAAATCAAATGGGCATTAGAAGGCACATGTTGGATCCTCCTGGAACTCTCAACACAATTACCCCATGTGCTGCTTGTAAGCTTTTAAGGAGAAGGTGTGCTCAAGAATGCCCTTTCTCTCCTTATTTCTCTCCCCATGAACCCCAGAAGTTTGCTTCTGTCCATAAAGTCTTTGGTGCCAGCAATGTCTCAAAATTGCTCATGGAAGTTCCAGAAAATCAAAGAGCAGATGCAGCCAATAGTCTTGTTTATGAAGCTAATGTGAGGCTGAGAGACCCGGTTTATGGCTGCATGGGTGCAATTTCAGGTCTCCAGCAGCAAATCCAATCTTTAAAAGCTGAGCTAAATGCAGTAATACACAGATTGGAGCTGCGTATGATGCAGAGTCGAAAACGATATAATTTATCGTATA 466 42.27 ERFDEISKKIKRETDASNPNQMGIRRHMLDPPGTLNTITPCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKLLMEVPENQRADAANSLVYEANVRLRDPVYGCMGAISGLQQQIQSLKAELNAVIHRLELRMMQSRKRYNLSY 155
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 46982579 46983805 + evm.model.ptg000006l.1024 HCH1g0301 538320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0301 155 MobiDBLite consensus disorder prediction 1 24 - -
HCH1g0301 155 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 38 144 - -
HCH1g0301 155 Pfam Lateral organ boundaries (LOB) domain 40 136 IPR004883 -
HCH1g0301 155 Coils Coil 119 150 - -
HCH1g0301 155 MobiDBLite consensus disorder prediction 1 15 - -
HCH1g0301 155 ProSiteProfiles LOB domain profile. 39 140 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0584 HCH-Chr13:4470567 HCH1g0301 HCH-Chr1:46982579 1.60E-55 dispersed
HCH1g0301 HCH-Chr1:46982579 HCH2g0930 HCH-Chr2:52711609 6.40E-37 dispersed
HCH1g0301 HCH-Chr1:46982579 HCH1g0310 HCH-Chr1:48342677 1.30E-45 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33040 PF03195 LOB 1.80E-40 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0301 - - - 0.0