Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH1g0316 | ATGGTAGCTTCAACTTCAAGCATCGCTTGTTTTTCGTCAGCATTTGTTTTTCCATCTCAAAACACACACAAAAAGATTTACTTTCCATTCCAATCAAATTCAAAAGTTTCAAAAACTCAATTCCAATTGAACAAAATATGTTGTAGTTTACCTCCGCAAAATCCCACAAGCAGTAGAGCTTCTTCCAGTTCCAAAAACAGGATGGAGGAATACAATTTAGCTATGAAGAAGTTGATGAGGAATCCGTATGAGTATTACCATGATCTGGGTATGAACTACACTGTGATAGCTGAGAATTTGATTGTCGGTTCCCAGCCTCAAAAACCTGAAGATATTGATTTCTTGAAAGAGGAAGGTGTGGCTTATATTCTCAATCTACAGCAGGATAAGGATTTCGAATATTGGGGAATCGACTTACAATCAATCATAACAAGATGTAAAGAACTCGGAATTCGTCATATGAGGAGACCTGCAAAAGATTTTGATCCTGATTCCCTGAGAAGTGAATTGCCTAAAGCTGTTTCCTCATTAGAATGGGCGATTTCAGAGGGTAAAGGAAAAGTTTATGTGCATTGCACTGCTGGACTGGGCAGGGCACCTGCAGTTGCAATAGCTTACCTATACTGGTTTTGTGGAATGAATTTAAATACAGCATATGAAACACTGACTTCAAAAAGACCCTGTGGACCAAATAAACGAGCAATCCGCGGAGCTACGTACGATCTATCTAAAAATGATCCATGGAAGGAGCCCTTTGAGAGCCTTCCAGAAAATGCATTTGAAGATATTGCAGATTGGGAGAGAAATTTGATCCAGGATCGTGTTCGTTCTCTTCGTGGAACTTGA | 846 | 39.36 | MVASTSSIACFSSAFVFPSQNTHKKIYFPFQSNSKVSKTQFQLNKICCSLPPQNPTSSRASSSSKNRMEEYNLAMKKLMRNPYEYYHDLGMNYTVIAENLIVGSQPQKPEDIDFLKEEGVAYILNLQQDKDFEYWGIDLQSIITRCKELGIRHMRRPAKDFDPDSLRSELPKAVSSLEWAISEGKGKVYVHCTAGLGRAPAVAIAYLYWFCGMNLNTAYETLTSKRPCGPNKRAIRGATYDLSKNDPWKEPFESLPENAFEDIADWERNLIQDRVRSLRGT | 281 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 48745374 | 48746979 | + | evm.model.ptg000006l.1009 | HCH1g0316 | 538335 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH1g0316 | 281 | SUPERFAMILY | (Phosphotyrosine protein) phosphatases II | 85 | 233 | IPR029021 | - | |
| HCH1g0316 | 281 | PANTHER | DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN | 31 | 249 | IPR052832 | GO:0005983(PANTHER)|GO:0009507(PANTHER)|GO:0019203(PANTHER)|GO:0046838(PANTHER)|GO:2001070(PANTHER) | |
| HCH1g0316 | 281 | ProSiteProfiles | Dual specificity protein phosphatase domain profile. | 92 | 248 | IPR020422 | GO:0006470(InterPro) | |
| HCH1g0316 | 281 | FunFam | Phosphoglucan phosphatase LSF2, chloroplastic | 75 | 281 | - | - | |
| HCH1g0316 | 281 | Pfam | Dual specificity phosphatase, catalytic domain | 102 | 228 | IPR000340 | GO:0016311(InterPro) | |
| HCH1g0316 | 281 | CDD | DSP_laforin-like | 91 | 237 | IPR045204 | GO:0019203(InterPro) | |
| HCH1g0316 | 281 | ProSiteProfiles | Tyrosine specific protein phosphatases domain profile. | 168 | 227 | IPR000387 | GO:0016311(InterPro) | |
| HCH1g0316 | 281 | Gene3D | Protein tyrosine phosphatase superfamily | 75 | 281 | IPR029021 | - | |
| HCH1g0316 | 281 | SMART | dsp_5 | 92 | 241 | IPR020422 | GO:0006470(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH1g0316 | HCH-Chr1:48745374 | HCH1g0714 | HCH-Chr1:55977202 | 1.70E-40 | dispersed |
Pathway information