Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0316 ATGGTAGCTTCAACTTCAAGCATCGCTTGTTTTTCGTCAGCATTTGTTTTTCCATCTCAAAACACACACAAAAAGATTTACTTTCCATTCCAATCAAATTCAAAAGTTTCAAAAACTCAATTCCAATTGAACAAAATATGTTGTAGTTTACCTCCGCAAAATCCCACAAGCAGTAGAGCTTCTTCCAGTTCCAAAAACAGGATGGAGGAATACAATTTAGCTATGAAGAAGTTGATGAGGAATCCGTATGAGTATTACCATGATCTGGGTATGAACTACACTGTGATAGCTGAGAATTTGATTGTCGGTTCCCAGCCTCAAAAACCTGAAGATATTGATTTCTTGAAAGAGGAAGGTGTGGCTTATATTCTCAATCTACAGCAGGATAAGGATTTCGAATATTGGGGAATCGACTTACAATCAATCATAACAAGATGTAAAGAACTCGGAATTCGTCATATGAGGAGACCTGCAAAAGATTTTGATCCTGATTCCCTGAGAAGTGAATTGCCTAAAGCTGTTTCCTCATTAGAATGGGCGATTTCAGAGGGTAAAGGAAAAGTTTATGTGCATTGCACTGCTGGACTGGGCAGGGCACCTGCAGTTGCAATAGCTTACCTATACTGGTTTTGTGGAATGAATTTAAATACAGCATATGAAACACTGACTTCAAAAAGACCCTGTGGACCAAATAAACGAGCAATCCGCGGAGCTACGTACGATCTATCTAAAAATGATCCATGGAAGGAGCCCTTTGAGAGCCTTCCAGAAAATGCATTTGAAGATATTGCAGATTGGGAGAGAAATTTGATCCAGGATCGTGTTCGTTCTCTTCGTGGAACTTGA 846 39.36 MVASTSSIACFSSAFVFPSQNTHKKIYFPFQSNSKVSKTQFQLNKICCSLPPQNPTSSRASSSSKNRMEEYNLAMKKLMRNPYEYYHDLGMNYTVIAENLIVGSQPQKPEDIDFLKEEGVAYILNLQQDKDFEYWGIDLQSIITRCKELGIRHMRRPAKDFDPDSLRSELPKAVSSLEWAISEGKGKVYVHCTAGLGRAPAVAIAYLYWFCGMNLNTAYETLTSKRPCGPNKRAIRGATYDLSKNDPWKEPFESLPENAFEDIADWERNLIQDRVRSLRGT 281
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 48745374 48746979 + evm.model.ptg000006l.1009 HCH1g0316 538335
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0316 281 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 85 233 IPR029021 -
HCH1g0316 281 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 31 249 IPR052832 GO:0005983(PANTHER)|GO:0009507(PANTHER)|GO:0019203(PANTHER)|GO:0046838(PANTHER)|GO:2001070(PANTHER)
HCH1g0316 281 ProSiteProfiles Dual specificity protein phosphatase domain profile. 92 248 IPR020422 GO:0006470(InterPro)
HCH1g0316 281 FunFam Phosphoglucan phosphatase LSF2, chloroplastic 75 281 - -
HCH1g0316 281 Pfam Dual specificity phosphatase, catalytic domain 102 228 IPR000340 GO:0016311(InterPro)
HCH1g0316 281 CDD DSP_laforin-like 91 237 IPR045204 GO:0019203(InterPro)
HCH1g0316 281 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 168 227 IPR000387 GO:0016311(InterPro)
HCH1g0316 281 Gene3D Protein tyrosine phosphatase superfamily 75 281 IPR029021 -
HCH1g0316 281 SMART dsp_5 92 241 IPR020422 GO:0006470(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0316 HCH-Chr1:48745374 HCH1g0714 HCH-Chr1:55977202 1.70E-40 dispersed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0316 - - - 0.0