Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0339 ATGGGAGGAAATTCTCCATGCGCCTCGTGCAAATTACTGCGGCGGCGGTGTGCTAAAGACTGCATTTTTGCCCCATATTTCCCCTCTGATGACCCCCATAAGTTTGCCATCGTCCATAAGGTTTTTGGTGCCAGCAATGTCAGTAAAATGTTGCAGGAACTTCCAATACAGCAGAGAGGAGACGCAGTGAGTAGCTTGGTGTACGAGGCAAGCGCGAGAGTGAGAGACCCAGTTTACGGGTGCGTGGGAGCAATATCTTACCTGCAAAATCAGGTGTCGCAGTTGCAGATGCAGCTGGCGGTGGCGCAGGCGGAGATTCTTTGCATTCAGATGCAGCAAGATCCAATTCTGCCATTGCCCAACTGCGATCCAAGCCAGATAGAAGATCATAATGCAGAAGATCATGAAAAAGCGTCGTTTTTCATCCAAAACCACAATGCTTTCCCATCTCAGTATCTCAATTTTTCTTCCTCCACTGGCAATGTAATTTATGATTCCCTCAAAGACAGTATTTTTGGACATGACATAGTTTCTTAA 537 46.74 MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPIQQRGDAVSSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDPILPLPNCDPSQIEDHNAEDHEKASFFIQNHNAFPSQYLNFSSSTGNVIYDSLKDSIFGHDIVS 178
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 49997334 49998466 - evm.model.ptg000006l.986 HCH1g0339 538358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0339 178 Coils Coil 85 105 - -
HCH1g0339 178 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
HCH1g0339 178 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
HCH1g0339 178 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 130 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0339 HCH-Chr1:49997334 HCH3g0911 HCH-Chr3:7895873 4.60E-47 dispersed
HCH1g0339 HCH-Chr1:49997334 HCH13g0561 HCH-Chr13:3994719 3.80E-33 wgd
HCH1g0339 HCH-Chr1:49997334 HCH2g0998 HCH-Chr2:53245819 1.60E-44 wgd
HCH1g0339 HCH-Chr1:49997334 HCH3g1473 HCH-Chr3:52775859 4.10E-48 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33043 PF03195 LOB 3.90E-42 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0339 - - - 0.0