Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH1g0339 | ATGGGAGGAAATTCTCCATGCGCCTCGTGCAAATTACTGCGGCGGCGGTGTGCTAAAGACTGCATTTTTGCCCCATATTTCCCCTCTGATGACCCCCATAAGTTTGCCATCGTCCATAAGGTTTTTGGTGCCAGCAATGTCAGTAAAATGTTGCAGGAACTTCCAATACAGCAGAGAGGAGACGCAGTGAGTAGCTTGGTGTACGAGGCAAGCGCGAGAGTGAGAGACCCAGTTTACGGGTGCGTGGGAGCAATATCTTACCTGCAAAATCAGGTGTCGCAGTTGCAGATGCAGCTGGCGGTGGCGCAGGCGGAGATTCTTTGCATTCAGATGCAGCAAGATCCAATTCTGCCATTGCCCAACTGCGATCCAAGCCAGATAGAAGATCATAATGCAGAAGATCATGAAAAAGCGTCGTTTTTCATCCAAAACCACAATGCTTTCCCATCTCAGTATCTCAATTTTTCTTCCTCCACTGGCAATGTAATTTATGATTCCCTCAAAGACAGTATTTTTGGACATGACATAGTTTCTTAA | 537 | 46.74 | MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPIQQRGDAVSSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDPILPLPNCDPSQIEDHNAEDHEKASFFIQNHNAFPSQYLNFSSSTGNVIYDSLKDSIFGHDIVS | 178 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 49997334 | 49998466 | - | evm.model.ptg000006l.986 | HCH1g0339 | 538358 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH1g0339 | 178 | Coils | Coil | 85 | 105 | - | - | |
HCH1g0339 | 178 | ProSiteProfiles | LOB domain profile. | 5 | 106 | IPR004883 | - | |
HCH1g0339 | 178 | Pfam | Lateral organ boundaries (LOB) domain | 6 | 103 | IPR004883 | - | |
HCH1g0339 | 178 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 4 | 130 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH1g0339 | HCH-Chr1:49997334 | HCH3g0911 | HCH-Chr3:7895873 | 4.60E-47 | dispersed | |
HCH1g0339 | HCH-Chr1:49997334 | HCH13g0561 | HCH-Chr13:3994719 | 3.80E-33 | wgd | |
HCH1g0339 | HCH-Chr1:49997334 | HCH2g0998 | HCH-Chr2:53245819 | 1.60E-44 | wgd | |
HCH1g0339 | HCH-Chr1:49997334 | HCH3g1473 | HCH-Chr3:52775859 | 4.10E-48 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
33043 | PF03195 | LOB | 3.90E-42 | No_clan | HCH | TF |
Pathway information
