Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0343 ATGAACGACGCCGATGTTTCCAAACAGATCCAGCAGATGGTCAGATTCATCCGCCAGGAAGCCGAGGAAAAGGCCAACGAGATCTTTGTATCCGCTGAAGAAGAATTCAATATTGAAAAGCTGCAATTGGTTGAGGCAGAGAAAAAGAAGATCAGGCAAGAGTACGAGAAGAAGGAGAAGCAAGTTGATATTCGGAAGAAGATTGAGTACTCCATGCAACTTAATGCTTCCCGGATCAAAGTTCTGCAAGCTCAGGATGATGTTGTGAATTCTATGAAAGAGGCAACATCAAAGGAGCTTCTGCATGTTAGCCATGATCACCATGTCTACAAACATCTTCTGAAAGATCTCATTGTTCAGAGTTTGCTTCGATTGAAAGAGCCCGCTGTTTTATTGCGATGCCGCAAAGATGACCTCATTTTGGTGGAATCTGTACTGAGCTCAGCAGCTGAGGAATATGCAGAGAAAGCAAAAGTTCACGAACCAGAGATTATTATCGACCATGTCCATCTTCCACCTGGTCCTAGCCATCACAATCCTCATGGTCTTTTCTGCTCTGGAGGTGTAGTGTTGGCATCTCGAGATGGGAAGATCGTTTTTGAGAACACCCTTGATGCTCGGTTGGATGTTGTCTTCCGTAAAAAACTTCCAGAGATCAGAAAACGGCTTTTTGGTCACGTCGTTGCATGA 690 44.35 MNDADVSKQIQQMVRFIRQEAEEKANEIFVSAEEEFNIEKLQLVEAEKKKIRQEYEKKEKQVDIRKKIEYSMQLNASRIKVLQAQDDVVNSMKEATSKELLHVSHDHHVYKHLLKDLIVQSLLRLKEPAVLLRCRKDDLILVESVLSSAAEEYAEKAKVHEPEIIIDHVHLPPGPSHHNPHGLFCSGGVVLASRDGKIVFENTLDARLDVVFRKKLPEIRKRLFGHVVA 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 50101046 50103877 - evm.model.ptg000006l.982 HCH1g0343 538362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0343 229 Coils Coil 38 61 - -
HCH1g0343 229 Gene3D - 1 62 - -
HCH1g0343 229 PANTHER ATPASE H+-TRANSPORTING V1 SUBUNIT E1A-RELATED 1 226 IPR002842 GO:0033178(InterPro)|GO:0046961(PANTHER)|GO:0046961(InterPro)|GO:1902600(InterPro)
HCH1g0343 229 Hamap V-type proton ATPase subunit E [atpE]. 8 225 IPR002842 GO:0033178(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
HCH1g0343 229 Gene3D - 92 227 IPR038495 -
HCH1g0343 229 Pfam ATP synthase (E/31 kDa) subunit 16 224 IPR002842 GO:0033178(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
HCH1g0343 229 SUPERFAMILY V-type ATPase subunit E-like 87 225 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0194 HCH-Chr1:20030407 HCH1g0343 HCH-Chr1:50101046 1.00E-52 dispersed
HCH1g0195 HCH-Chr1:20033620 HCH1g0343 HCH-Chr1:50101046 9.10E-46 dispersed
HCH1g0196 HCH-Chr1:20071663 HCH1g0343 HCH-Chr1:50101046 3.00E-20 dispersed
HCH1g0343 HCH-Chr1:50101046 HCH4g1835 HCH-Chr4:47421665 1.70E-118 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0343 K02150 - vvi:100246834 385.956