Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0356 ATGTGTGCGATCGCAGTAACAAAGAGTCCTTTGTTTTCATCTCCAAGAATCACTTCAATCTTGTACAATTCTTCTACTCCTTCTCCTCGATCGGTATCGAGCCCCACTAAATCACTCTCATCGCCATCGTCGACGTCGTCGTTATGGCTATCATCATCGTCGCCTCTACGGATTCAGAAACCTCCGGTTGATACGGTTTTGAAGAGGAAAAGACCGGCTAGAATTGACGTGCCGATGGTGTCCGTCGATTGTTTCGCCGTCCAAAGCGAGAGAGTGGAGGTGATGGAGGAAGAAGGCGATGAGTATTCCGTCTACTGCAAGAGAGGAAGGAGAGGTCGTAACATGGAGGATCGATACTCGGCTACAGTCGATATTCGTGGAGATTCTCGACAGGCGTTTTTTGGGGTTTTTGATGGTCATGGTGGACCAAAAGTTGCAGAATTTGCAGCTGAGAAAATGGGGAAGAATGTGATTGATCAAGTGATGAGAAGAAGTGAAGAGGAAGTTGAAGAAGCAATCAAAGATGGGTTTTTAATGACAGATAGAGAAGTTTTAGAGCAGGGTGTTAGCGGCGGTGCTTGTTGTGCAGCTGCATTGATCAGAAATGGCAATCTTGTGGTCTCGAATGTCGGCGATTGTCGTGCTGTTATGAGTAGAGGTGGTACGGCTGAAGCCCTAACATCCGATCACCGTCCCAATAGAGAAGATGAAAGAAATAGAATTGAATCTTCGGGTGGTTATGTAGATTGCTGTCGTGGGGTATGGAGGATTGAAGGATCACTAGCGGTGTCAAGAGCAATAGGAGATGAACGTCTTAAGCAATGGGTAATATCAGAGCCAGAAACAAAAGTATTGAAAATCGACAATAACTGCAATTTCTTAATACTAGCTTCTGATGGTCTATGGGACAAAATTACGAACCAAGAAGCAGTGGATATAGTCCACCCATTGTGTGTAGGTTTGGAGAAGCCGAAGCTACATTCCGCTTGTAAAAAGCTCGTTGACTTGTCGATATCGAGAGGCTCGCTTGATGATACGAGTGTCATGATCGTCAATTTGGCTTGCTTTGTTTGA 1074 45.16 MCAIAVTKSPLFSSPRITSILYNSSTPSPRSVSSPTKSLSSPSSTSSLWLSSSSPLRIQKPPVDTVLKRKRPARIDVPMVSVDCFAVQSERVEVMEEEGDEYSVYCKRGRRGRNMEDRYSATVDIRGDSRQAFFGVFDGHGGPKVAEFAAEKMGKNVIDQVMRRSEEEVEEAIKDGFLMTDREVLEQGVSGGACCAAALIRNGNLVVSNVGDCRAVMSRGGTAEALTSDHRPNREDERNRIESSGGYVDCCRGVWRIEGSLAVSRAIGDERLKQWVISEPETKVLKIDNNCNFLILASDGLWDKITNQEAVDIVHPLCVGLEKPKLHSACKKLVDLSISRGSLDDTSVMIVNLACFV 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 50431583 50433208 - evm.model.ptg000006l.969 HCH1g0356 538375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0356 357 Gene3D - 100 355 IPR036457 -
HCH1g0356 357 ProSitePatterns PPM-type phosphatase domain signature. 133 141 IPR000222 GO:0043169(InterPro)
HCH1g0356 357 SMART PP2C_4 92 351 IPR001932 -
HCH1g0356 357 FunFam probable protein phosphatase 2C 25 94 356 - -
HCH1g0356 357 Pfam Protein phosphatase 2C 111 345 IPR001932 -
HCH1g0356 357 ProSiteProfiles PPM-type phosphatase domain profile. 101 353 IPR001932 -
HCH1g0356 357 SUPERFAMILY PP2C-like 101 353 IPR036457 -
HCH1g0356 357 MobiDBLite consensus disorder prediction 23 53 - -
HCH1g0356 357 CDD PP2Cc 102 353 IPR001932 -
HCH1g0356 357 PANTHER PROTEIN PHOSPHATASE 96 351 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0356 HCH-Chr1:50431583 HCH7g0133 HCH-Chr7:899353 3.00E-37 dispersed
HCH11g1331 HCH-Chr11:45244950 HCH1g0356 HCH-Chr1:50431583 2.80E-20 transposed
HCH13g0027 HCH-Chr13:200460 HCH1g0356 HCH-Chr1:50431583 3.40E-74 transposed
HCH4g0057 HCH-Chr4:335858 HCH1g0356 HCH-Chr1:50431583 7.80E-63 transposed
HCH5g0049 HCH-Chr5:278917 HCH1g0356 HCH-Chr1:50431583 3.00E-16 transposed
HCH1g0356 HCH-Chr1:50431583 HCH3g1454 HCH-Chr3:52510969 1.90E-100 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0356 K17506 - mdm:114825896 415.616