Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH1g0356 | ATGTGTGCGATCGCAGTAACAAAGAGTCCTTTGTTTTCATCTCCAAGAATCACTTCAATCTTGTACAATTCTTCTACTCCTTCTCCTCGATCGGTATCGAGCCCCACTAAATCACTCTCATCGCCATCGTCGACGTCGTCGTTATGGCTATCATCATCGTCGCCTCTACGGATTCAGAAACCTCCGGTTGATACGGTTTTGAAGAGGAAAAGACCGGCTAGAATTGACGTGCCGATGGTGTCCGTCGATTGTTTCGCCGTCCAAAGCGAGAGAGTGGAGGTGATGGAGGAAGAAGGCGATGAGTATTCCGTCTACTGCAAGAGAGGAAGGAGAGGTCGTAACATGGAGGATCGATACTCGGCTACAGTCGATATTCGTGGAGATTCTCGACAGGCGTTTTTTGGGGTTTTTGATGGTCATGGTGGACCAAAAGTTGCAGAATTTGCAGCTGAGAAAATGGGGAAGAATGTGATTGATCAAGTGATGAGAAGAAGTGAAGAGGAAGTTGAAGAAGCAATCAAAGATGGGTTTTTAATGACAGATAGAGAAGTTTTAGAGCAGGGTGTTAGCGGCGGTGCTTGTTGTGCAGCTGCATTGATCAGAAATGGCAATCTTGTGGTCTCGAATGTCGGCGATTGTCGTGCTGTTATGAGTAGAGGTGGTACGGCTGAAGCCCTAACATCCGATCACCGTCCCAATAGAGAAGATGAAAGAAATAGAATTGAATCTTCGGGTGGTTATGTAGATTGCTGTCGTGGGGTATGGAGGATTGAAGGATCACTAGCGGTGTCAAGAGCAATAGGAGATGAACGTCTTAAGCAATGGGTAATATCAGAGCCAGAAACAAAAGTATTGAAAATCGACAATAACTGCAATTTCTTAATACTAGCTTCTGATGGTCTATGGGACAAAATTACGAACCAAGAAGCAGTGGATATAGTCCACCCATTGTGTGTAGGTTTGGAGAAGCCGAAGCTACATTCCGCTTGTAAAAAGCTCGTTGACTTGTCGATATCGAGAGGCTCGCTTGATGATACGAGTGTCATGATCGTCAATTTGGCTTGCTTTGTTTGA | 1074 | 45.16 | MCAIAVTKSPLFSSPRITSILYNSSTPSPRSVSSPTKSLSSPSSTSSLWLSSSSPLRIQKPPVDTVLKRKRPARIDVPMVSVDCFAVQSERVEVMEEEGDEYSVYCKRGRRGRNMEDRYSATVDIRGDSRQAFFGVFDGHGGPKVAEFAAEKMGKNVIDQVMRRSEEEVEEAIKDGFLMTDREVLEQGVSGGACCAAALIRNGNLVVSNVGDCRAVMSRGGTAEALTSDHRPNREDERNRIESSGGYVDCCRGVWRIEGSLAVSRAIGDERLKQWVISEPETKVLKIDNNCNFLILASDGLWDKITNQEAVDIVHPLCVGLEKPKLHSACKKLVDLSISRGSLDDTSVMIVNLACFV | 357 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 50431583 | 50433208 | - | evm.model.ptg000006l.969 | HCH1g0356 | 538375 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH1g0356 | 357 | Gene3D | - | 100 | 355 | IPR036457 | - | |
HCH1g0356 | 357 | ProSitePatterns | PPM-type phosphatase domain signature. | 133 | 141 | IPR000222 | GO:0043169(InterPro) | |
HCH1g0356 | 357 | SMART | PP2C_4 | 92 | 351 | IPR001932 | - | |
HCH1g0356 | 357 | FunFam | probable protein phosphatase 2C 25 | 94 | 356 | - | - | |
HCH1g0356 | 357 | Pfam | Protein phosphatase 2C | 111 | 345 | IPR001932 | - | |
HCH1g0356 | 357 | ProSiteProfiles | PPM-type phosphatase domain profile. | 101 | 353 | IPR001932 | - | |
HCH1g0356 | 357 | SUPERFAMILY | PP2C-like | 101 | 353 | IPR036457 | - | |
HCH1g0356 | 357 | MobiDBLite | consensus disorder prediction | 23 | 53 | - | - | |
HCH1g0356 | 357 | CDD | PP2Cc | 102 | 353 | IPR001932 | - | |
HCH1g0356 | 357 | PANTHER | PROTEIN PHOSPHATASE | 96 | 351 | IPR015655 | GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH1g0356 | HCH-Chr1:50431583 | HCH7g0133 | HCH-Chr7:899353 | 3.00E-37 | dispersed | |
HCH11g1331 | HCH-Chr11:45244950 | HCH1g0356 | HCH-Chr1:50431583 | 2.80E-20 | transposed | |
HCH13g0027 | HCH-Chr13:200460 | HCH1g0356 | HCH-Chr1:50431583 | 3.40E-74 | transposed | |
HCH4g0057 | HCH-Chr4:335858 | HCH1g0356 | HCH-Chr1:50431583 | 7.80E-63 | transposed | |
HCH5g0049 | HCH-Chr5:278917 | HCH1g0356 | HCH-Chr1:50431583 | 3.00E-16 | transposed | |
HCH1g0356 | HCH-Chr1:50431583 | HCH3g1454 | HCH-Chr3:52510969 | 1.90E-100 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH1g0356 | K17506 | - | mdm:114825896 | 415.616 |