Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0362 ATGTGCAGTGGTTCAAAGAATAAAGTCGGTTCCTCAACTTTGGCCATGGAAAGCAAGTTGCAGAAGCTCAATGATGGGGTTTTCTCTGCTAATTCAATCTTACTTGAACTATCTGCTTCAGATGATGTAGAAGGTTTCAAGAGAGAAGTAGAAGAAAAGGGATTCGATATCGATGAACCAAGTTATTGGTATGGGAGAAGAATTGGGTCTAAGAAGATGGGGTTTGAGAAAAGGACACCACTCATGGTTGCTGCTATGTTTGGAAGTTTTAAGGTTGTCAAATATGTAATTGAGACCGGCAAGGTTGATGTCAATCGGTCTTGTGGTTCGGATTTGGTTACTGCCCTTCATTGTGCTACTGCTGGTGGCTCTGCTTCTTCAATTGAGACCATCAAGTGCTTACTTGATGGATCTGCAGATATTAATTGTGTCGATGCGAATGGGAGGAGACCGGTCGATTTGATTCTCCCGGCTTGCAGGATGATGGGTAATTCAGGGAGGAAGGTGATGGAGATGTTGTTAAGAGGAGATGATATGACTGGGGAAGGTGATCTGAGCCTTTACTCAGAAGAAGACCAGCAGAGAATTGCTGCATCTCCATCGATGAAAGAAGGGAGTGACAAGAAAGAATATCCTGTTGATGTCTCACTCCCAGATATTAACAGTGGGATGTATGGTTCTGATGAATTCAGGATGTATACTTTCAAAGTGAAGCCTTGTTCAAGGGCCTATTCTCATGATTGGACCGAGTGCCCTTTCGTTCATCCTGGTGAGAATGCCAGGCGAAGAGACCCCAGGAAGTACCCTTATAGCTGTGTTCCATGCCCGGAATTCCGAAAGGGGACGTGCCAAAAGGGAGATTCCTGTGAGTATGCACATGGTGTCTTTGAATCTTGGCTCCATCCTGCACAATACCGAACCCGGCTGTGCAAGGATGAGACTGGGTGCACAAGGAAGGTCTGCTTCTTTGCTCACAAAACTGAAGAATTGCGTCCGGTGTATGCTTCCACAGGCTCAGGCATGCCTTCACCTAGGTCTCTTTCAGGCAGTGCAGCAGATTTGTCAACTATGAGCCCGTTGGCTCTTGGTTCATCATCGTTGTCGTTGCCTACCACATCAACACCTCCCATGTCTCCCTTAGCATCAGTGTCTTCCCCCAAGAATGGAAACTTGTGGCAAAACAAAATTAACCTTACCCCTCCTGCCCTGCAGCTCCCTGGTAGCCGGTTAAAGTCTACTTTGAGTGCCCGAGATTTGGATTTTGAGATGGAATTGCTTGGGTTAGAAAAGAATGCAAGCCAATTACATCATCAACAATTGATCGATGAGATATCACGACTTTCCTCTCCTTCATACTGGAATTCCGAAGTAAGCAGGACCGGAGAGTTGAAGCCATCAAACATGGATGACATCTTTGGATCATTGGATTCTTCAATGTTGTCCCAGTTGCAAGGTGGCTCACTAAAAGCACCAATATCAGCTCAAGTACAATCTCCAACCGGCCTCCAGATACGCCAGAACATGAACCAACTCCGTGCGAGTTACCCCACTAACTTATCATCCTCACCAGTTAAGAACACCGCATCCTACGGCTTCGATTCATCCAGCTCAGTGGCAGCTGCAGTGATGAATTCAAGGTCTGCTGCCTTTGCAAAACGTAGCCAGAGTTTTATTGATCGAGCTGCGGTGACACGTCTTTCTGAGCTCACTGCGAGTGCAAATTCTGCAGCTTCAATGTCATCCCATCTTTCAGATTGGAACTCGCCCAGCGGAAAACTAGATTGGGGGATGCACGGTGACGATCTCAACAAACTGAGGAAATCTGCTTCTTTCGCGATCCGCAATAACAATGTAAGAACTCCCACCTTTACACCATCAGCTGAGGAGCCGGATGTGTCTTGGGTCAACTCCCTAGTTAAAGATGTTCCCTCGGACAGCTTTGAGAGGTTTAATGCCGAGAAGCGGCACTACAACCTCAACAAGGGAGTCCATGAGATGCTCCCATCCTGGATGGAGCAGCAGTTTTACCTAGAACAGGAGCAGAAAGTGGCATAA 2055 46.72 MCSGSKNKVGSSTLAMESKLQKLNDGVFSANSILLELSASDDVEGFKREVEEKGFDIDEPSYWYGRRIGSKKMGFEKRTPLMVAAMFGSFKVVKYVIETGKVDVNRSCGSDLVTALHCATAGGSASSIETIKCLLDGSADINCVDANGRRPVDLILPACRMMGNSGRKVMEMLLRGDDMTGEGDLSLYSEEDQQRIAASPSMKEGSDKKEYPVDVSLPDINSGMYGSDEFRMYTFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYSCVPCPEFRKGTCQKGDSCEYAHGVFESWLHPAQYRTRLCKDETGCTRKVCFFAHKTEELRPVYASTGSGMPSPRSLSGSAADLSTMSPLALGSSSLSLPTTSTPPMSPLASVSSPKNGNLWQNKINLTPPALQLPGSRLKSTLSARDLDFEMELLGLEKNASQLHHQQLIDEISRLSSPSYWNSEVSRTGELKPSNMDDIFGSLDSSMLSQLQGGSLKAPISAQVQSPTGLQIRQNMNQLRASYPTNLSSSPVKNTASYGFDSSSSVAAAVMNSRSAAFAKRSQSFIDRAAVTRLSELTASANSAASMSSHLSDWNSPSGKLDWGMHGDDLNKLRKSASFAIRNNNVRTPTFTPSAEEPDVSWVNSLVKDVPSDSFERFNAEKRHYNLNKGVHEMLPSWMEQQFYLEQEQKVA 684
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 50648123 50650177 - evm.model.ptg000006l.963 HCH1g0362 538381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0362 684 SMART c3hfinal6 304 327 IPR000571 GO:0046872(InterPro)
HCH1g0362 684 SMART c3hfinal6 269 295 IPR000571 GO:0046872(InterPro)
HCH1g0362 684 SUPERFAMILY Ankyrin repeat 34 161 IPR036770 -
HCH1g0362 684 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 273 294 IPR000571 GO:0046872(InterPro)
HCH1g0362 684 SMART ANK_2a 111 143 IPR002110 GO:0005515(InterPro)
HCH1g0362 684 SMART ANK_2a 76 106 IPR002110 GO:0005515(InterPro)
HCH1g0362 684 PANTHER UNKEMPT FAMILY MEMBER 69 641 IPR045234 -
HCH1g0362 684 ProSiteProfiles Ankyrin repeat profile. 76 100 IPR002110 GO:0005515(InterPro)
HCH1g0362 684 ProSiteProfiles Ankyrin repeat region circular profile. 76 100 - -
HCH1g0362 684 FunFam Zinc finger CCCH domain-containing protein 66 227 295 - -
HCH1g0362 684 Gene3D - 5 158 IPR036770 -
HCH1g0362 684 Pfam Ankyrin repeats (3 copies) 76 144 IPR002110 GO:0005515(InterPro)
HCH1g0362 684 Gene3D - 270 332 - -
HCH1g0362 684 ProSiteProfiles Ankyrin repeat profile. 111 146 IPR002110 GO:0005515(InterPro)
HCH1g0362 684 MobiDBLite consensus disorder prediction 365 384 - -
HCH1g0362 684 ProSiteProfiles Zinc finger C3H1-type profile. 269 296 IPR000571 GO:0046872(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0362 HCH-Chr1:50648123 HCH8g0682 HCH-Chr8:43524013 1.30E-46 dispersed
HCH11g0656 HCH-Chr11:29146192 HCH1g0362 HCH-Chr1:50648123 7.40E-141 transposed
HCH6g0358 HCH-Chr6:5775836 HCH1g0362 HCH-Chr1:50648123 2.30E-121 transposed
HCH1g0362 HCH-Chr1:50648123 HCH2g1018 HCH-Chr2:53400203 4.00E-208 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33045 PF12796 Ank_2 2.10E-07 CL0465 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0362 - - - 0.0