Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0364 ATGGCTTCCATCTCTTCCAGTCCTCGCACCGTCGAAGATATCTTCAAGGATTATAGCGCTCGCCGCTCAGGTCTTGTTCGCGCTCTCACTTACGATGTGGATGAATTTTACGCTCTTTGCGATCCTGAGAAGGAGAATTTGTGTTTGTACGGACACCCGAATGAGTCGTGGGAAGTGACTTTGCCTGCTGAGGAAGTTCCGTCTGAGCTTCCTGAACCTGCTTTGGGCATTAATTTTGCAAGAGATGGGATGAAGCGCAGAGATTGGCTTTCTTTGGTGGCTGTGCATAGTGATTGTTGGTTACTTTCAGTTGCTTTTTACTTTGGTGCTCGACTTAACCGCAATGAGCGGAAGCGACTATTTAGCCTGATAAATGATCTACCCACCCTATTTGAAGTCGCCACTGGAAGGAAACCTGGAAAAGACAAACCCAGTATGGATAGTGGAAGTAAATCTAGAAACAGCTCAAAGAGATCATTAGATGGATCGATGAGAAGTAGTAATCCTAAGTTACTCGATGAAAGCTATGGTGAGGATGAAGACGAGCACGGTGATACTCTCTGTGGGAGCTGTGGCGGAAATTACAACGCAGATGAGTTTTGGATTGGATGTGACATCTGTGAGAGGTGGTTTCATGGAAAATGTGTGAAGATAACACCTGCTAAGGCGGAAAGTATCAAGCAGTACAAATGCCCCTCCTGCAGCATAAAGAGAGGGAGACAGTAG 726 46.01 MASISSSPRTVEDIFKDYSARRSGLVRALTYDVDEFYALCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCWLLSVAFYFGARLNRNERKRLFSLINDLPTLFEVATGRKPGKDKPSMDSGSKSRNSSKRSLDGSMRSSNPKLLDESYGEDEDEHGDTLCGSCGGNYNADEFWIGCDICERWFHGKCVKITPAKAESIKQYKCPSCSIKRGRQ 241
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 50779798 50797988 - evm.model.ptg000006l.961 HCH1g0364 538383
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0364 241 CDD PHD_AL_plant 187 237 IPR044104 -
HCH1g0364 241 SMART PHD_3 187 235 IPR001965 -
HCH1g0364 241 Pfam PHD-finger 188 234 IPR019787 -
HCH1g0364 241 FunFam PHD finger alfin-like protein 180 236 - -
HCH1g0364 241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 177 235 IPR013083 -
HCH1g0364 241 ProSiteProfiles Zinc finger PHD-type profile. 185 237 IPR019787 -
HCH1g0364 241 SUPERFAMILY FYVE/PHD zinc finger 176 238 IPR011011 -
HCH1g0364 241 ProSitePatterns Zinc finger PHD-type signature. 188 234 IPR019786 -
HCH1g0364 241 PANTHER CPG BINDING PROTEIN 7 240 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
HCH1g0364 241 MobiDBLite consensus disorder prediction 149 170 - -
HCH1g0364 241 Pfam Alfin 10 135 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
HCH1g0364 241 MobiDBLite consensus disorder prediction 135 178 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0555 HCH-Chr10:4467845 HCH1g0364 HCH-Chr1:50779798 7.90E-88 dispersed
HCH1g0364 HCH-Chr1:50779798 HCH4g0514 HCH-Chr4:3390936 2.20E-89 dispersed
HCH1g0364 HCH-Chr1:50779798 HCH11g0087 HCH-Chr11:1152436 6.10E-111 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33046 PF12165 Alfin 2.40E-67 No_clan HCH TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0364 K26274 - csv:101211934 463.766