Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0364 ATGGCTTCCATCTCTTCCAGTCCTCGCACCGTCGAAGATATCTTCAAGGATTATAGCGCTCGCCGCTCAGGTCTTGTTCGCGCTCTCACTTACGATGTGGATGAATTTTACGCTCTTTGCGATCCTGAGAAGGAGAATTTGTGTTTGTACGGACACCCGAATGAGTCGTGGGAAGTGACTTTGCCTGCTGAGGAAGTTCCGTCTGAGCTTCCTGAACCTGCTTTGGGCATTAATTTTGCAAGAGATGGGATGAAGCGCAGAGATTGGCTTTCTTTGGTGGCTGTGCATAGTGATTGTTGGTTACTTTCAGTTGCTTTTTACTTTGGTGCTCGACTTAACCGCAATGAGCGGAAGCGACTATTTAGCCTGATAAATGATCTACCCACCCTATTTGAAGTCGCCACTGGAAGGAAACCTGGAAAAGACAAACCCAGTATGGATAGTGGAAGTAAATCTAGAAACAGCTCAAAGAGATCATTAGATGGATCGATGAGAAGTAGTAATCCTAAGTTACTCGATGAAAGCTATGGTGAGGATGAAGACGAGCACGGTGATACTCTCTGTGGGAGCTGTGGCGGAAATTACAACGCAGATGAGTTTTGGATTGGATGTGACATCTGTGAGAGGTGGTTTCATGGAAAATGTGTGAAGATAACACCTGCTAAGGCGGAAAGTATCAAGCAGTACAAATGCCCCTCCTGCAGCATAAAGAGAGGGAGACAGTAG 726 46.01 MASISSSPRTVEDIFKDYSARRSGLVRALTYDVDEFYALCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCWLLSVAFYFGARLNRNERKRLFSLINDLPTLFEVATGRKPGKDKPSMDSGSKSRNSSKRSLDGSMRSSNPKLLDESYGEDEDEHGDTLCGSCGGNYNADEFWIGCDICERWFHGKCVKITPAKAESIKQYKCPSCSIKRGRQ 241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 50779798 50797988 - evm.model.ptg000006l.961 HCH1g0364 538383

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0364 241 CDD PHD_AL_plant 187 237 IPR044104 -
HCH1g0364 241 SMART PHD_3 187 235 IPR001965 -
HCH1g0364 241 Pfam PHD-finger 188 234 IPR019787 -
HCH1g0364 241 FunFam PHD finger alfin-like protein 180 236 - -
HCH1g0364 241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 177 235 IPR013083 -
HCH1g0364 241 ProSiteProfiles Zinc finger PHD-type profile. 185 237 IPR019787 -
HCH1g0364 241 SUPERFAMILY FYVE/PHD zinc finger 176 238 IPR011011 -
HCH1g0364 241 ProSitePatterns Zinc finger PHD-type signature. 188 234 IPR019786 -
HCH1g0364 241 PANTHER CPG BINDING PROTEIN 7 240 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
HCH1g0364 241 MobiDBLite consensus disorder prediction 149 170 - -
HCH1g0364 241 Pfam Alfin 10 135 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
HCH1g0364 241 MobiDBLite consensus disorder prediction 135 178 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0364 K26274 - - csv:101211934 463.766
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0555 HCH-Chr10:4467845 HCH1g0364 HCH-Chr1:50779798 7.90E-88 dispersed
HCH1g0364 HCH-Chr1:50779798 HCH4g0514 HCH-Chr4:3390936 2.20E-89 dispersed
HCH1g0364 HCH-Chr1:50779798 HCH11g0087 HCH-Chr11:1152436 6.10E-111 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH11g0791 . 1 252 Alfin-like Transcription Factor Family AT1G14510 84.5 2.1e-114 408.7
HCH10g0555 . 17 259 Alfin-like Transcription Factor Family AT1G14510 69.1 1.7e-95 345.9
HCH4g0514 . 9 254 Alfin-like Transcription Factor Family AT1G14510 68.7 2.4e-94 342.0
HCH4g1501 . 10 255 Alfin-like Transcription Factor Family AT1G14510 63.0 2.9e-87 318.5
HCH1g0364 . 8 235 Alfin-like Transcription Factor Family AT1G14510 61.3 3.8e-79 291.6
HCH11g0087 . 7 236 Alfin-like Transcription Factor Family AT1G14510 59.6 3.2e-78 288.5
HCH10g0555 . 9 261 Alfin-like Transcription Factor Family AT5G26210 74.3 7.1e-110 393.7
HCH4g0514 . 1 257 Alfin-like Transcription Factor Family AT5G26210 72.8 3.9e-108 387.9
HCH11g0791 . 9 254 Alfin-like Transcription Factor Family AT5G26210 74.9 1.9e-94 342.4
HCH4g1501 . 5 255 Alfin-like Transcription Factor Family AT5G26210 64.7 4.2e-94 341.3
HCH1g0364 . 7 240 Alfin-like Transcription Factor Family AT5G26210 59.9 1.3e-82 303.1
HCH11g0087 . 4 238 Alfin-like Transcription Factor Family AT5G26210 57.8 1.6e-80 296.2
HCH4g0514 . 1 257 Alfin-like Transcription Factor Family AT3G42790 68.6 7.8e-101 363.6
HCH10g0555 . 9 261 Alfin-like Transcription Factor Family AT3G42790 68.5 1.5e-99 359.4
HCH4g1501 . 1 255 Alfin-like Transcription Factor Family AT3G42790 63.1 4.3e-91 331.3
HCH11g0791 . 9 254 Alfin-like Transcription Factor Family AT3G42790 72.0 1.6e-90 329.3
HCH1g0364 . 7 240 Alfin-like Transcription Factor Family AT3G42790 61.1 4.7e-82 301.2
HCH11g0087 . 6 238 Alfin-like Transcription Factor Family AT3G42790 56.8 7.1e-78 287.3
HCH1g0364 . 1 241 Alfin-like Transcription Factor Family AT5G05610 80.2 2.0e-114 408.7
HCH11g0087 . 4 239 Alfin-like Transcription Factor Family AT5G05610 75.1 1.0e-105 379.8
HCH4g0514 . 8 256 Alfin-like Transcription Factor Family AT5G05610 65.2 4.9e-92 334.3
HCH10g0555 . 16 261 Alfin-like Transcription Factor Family AT5G05610 63.6 4.5e-90 327.8
HCH4g1501 . 9 252 Alfin-like Transcription Factor Family AT5G05610 63.5 5.9e-90 327.4
HCH11g0791 . 9 254 Alfin-like Transcription Factor Family AT5G05610 62.2 2.4e-83 305.4
HCH1g0364 . 43 241 Alfin-like Transcription Factor Family AT3G11200 82.2 2.4e-96 348.6
HCH11g0087 . 42 239 Alfin-like Transcription Factor Family AT3G11200 74.3 3.3e-85 311.6
HCH4g0514 . 44 256 Alfin-like Transcription Factor Family AT3G11200 63.7 4.0e-75 278.1
HCH10g0555 . 52 261 Alfin-like Transcription Factor Family AT3G11200 63.7 2.2e-73 272.3
HCH4g1501 . 45 248 Alfin-like Transcription Factor Family AT3G11200 61.7 2.3e-70 262.3
HCH11g0791 . 44 254 Alfin-like Transcription Factor Family AT3G11200 62.6 1.2e-68 256.5
HCH11g0791 . 1 161 Alfin-like Transcription Factor Family AT2G02470 87.0 4.2e-78 288.1
HCH10g0555 . 9 166 Alfin-like Transcription Factor Family AT2G02470 76.6 2.8e-66 248.8
HCH4g0514 . 1 158 Alfin-like Transcription Factor Family AT2G02470 76.6 2.0e-64 242.7
HCH4g1501 . 10 144 Alfin-like Transcription Factor Family AT2G02470 78.5 6.8e-60 227.6
HCH1g0364 . 8 155 Alfin-like Transcription Factor Family AT2G02470 67.5 5.6e-54 208.0
HCH11g0087 . 7 154 Alfin-like Transcription Factor Family AT2G02470 66.2 2.1e-53 206.1
HCH4g0514 . 1 167 Alfin-like Transcription Factor Family AT5G20510 78.6 4.7e-74 274.2
HCH10g0555 . 9 172 Alfin-like Transcription Factor Family AT5G20510 78.2 3.1e-73 271.6
HCH4g1501 . 1 164 Alfin-like Transcription Factor Family AT5G20510 73.3 4.3e-67 251.1
HCH11g0791 . 3 172 Alfin-like Transcription Factor Family AT5G20510 69.8 5.2e-65 244.2
HCH1g0364 . 7 157 Alfin-like Transcription Factor Family AT5G20510 64.3 9.2e-54 206.8
HCH11g0087 . 6 163 Alfin-like Transcription Factor Family AT5G20510 60.0 6.6e-52 200.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001062 3 2 2 5 5 2 4 2 3 2 2 2 3 2 2 4 2 2 4 3 2 2 2 3 3 3 2 3 3 2 81
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33046 PF12165 Alfin 2.40E-67 No_clan HCH TF