Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0366 ATGACGAAACCACCCTCCTTTTCCCTTTCCTTCACCATCATCACTTTTTCTCTCACTATTTTCCTCCTTCTCTCTCCATCCCACTCTCTCGGCTCCGCTTCCACGCTCGCCGTCACCTCCGCCCCCGCCACCGTCTGCGGGATCACCGCCGGCAACCCAACACAACGCATACTATGTTTCCAAAACAATCAAACCCAGAACCAAACAATCTCCATTAATCCAAATGTCTCTTTCTCTTCCATTTCCGGCGGCCGTAATTTCTTCTGTGCTTTAAGAGACGGTGGCTACAGCCTTCTTTGTTGGGATTATAATTCTCGAAACTCCACTTTTGTTCTTAAAAGATTGTATATTAACGATACTGTTTTATTAGACAATCTCTCTGTCGGAAACGACCAGATTTGTGCCATGTCATTGGGTGTCGGAAACGTAACTTGTTGGAGAGGACAAGAAGGTAATTATGTAAATGTGAATGTGAAATTTGGGTTTCCTAGTTTTGATTCTATTTCTTCTGGGTTTGGGTTTTCTTGTGGGGTTTTGAAGGATTTTGATTTGGTTAGGTGTTGGGGGAGTGATTTGTTGATTGCTAATGGAATTCAAAATGGGTTTGGGAATATGTCTATTTTGAGAATTTTTGCTGGTGGGTTTCATGTTTGTGGATTTAATATGAGTAATGGGTTGGTTTGTAAAGGGAATAATGATTTTGGCCAATTGGAATTTCCTTCTCATTTAGCTTTTGAGTTTAGTGATTTGGCTCTTGGTGAGAGGCATAGTTGTGGGATTCTTCAATCTAATGGATCTGTGGTGTGTTGGGGTGGAGGAGGAGGAGGGTTTTCGGTCGATTCGATTCGTGGCGTTTCGTTTGAATTGATTGTTTCAGGGGATGATTTTGTGTGTGGATTGACAAGGAGGAATCTTTCTGTTTTGTGTTGGGGGCCTGGTTGGAGTGGGAATGTGTCTGTTTCTGAGGTTTCGGTTGAGCTTCCTCTTCCGAAAATTCTTCCGGGGCCTTGTGTTCAATCTTCTTGTAGTGATTGTGGTGTTTTTCCTTTGTCTCAAGACCTTTGTCCGGGTCCGGGAAATGTATGTAATCGTTGTCAACCTCCTGTTTCAATGCCACCGCTAACTCCGATGTCACCATCGCCGTCTGTGCTTCCTCCGCTGGTGTTGACTCCATCGCCTCCGTCTCGAACCTTGACTAGGGGTTTATTAGCATTTGCTATTGTTGGGTCAGTTGGAGCTTTTGCTGGTATTTGTACAGTAGTTTATTGTTTGTGGACTGGGGTTTGTTTTGGGCACAAAAAGATACACAATTCAGTTCAACCTACCATTACAAGGGCTGCGAGTTCCAATGGAGGGACGACGTCGAATAACAGCCCGCCTTCGAGATCATTGACAATCAGGCGGCAGGGATCTAGAATTATGCGAAGGCAGAGGAGTGGAACCTCGTCGAAGCATGCGGAGAGGGCTGAGGAATTCGCTTTTGCTGAGCTCGCAATGGCCACCAACGATTTCTCTCTGGAGAACAAGATTGGTGCCGGAAGTTTTGGTGTCGTGTATAGAGGCAAATTATTAGACGGTCGGGAAGTTGCCATCAAAAGGGGTGAAACGGGGGCAAAAAAGAAGAAGTTTCAGGAGAAAGAGAGTGCTTTTGATTCAGAATTGGCTTTCTTGTCTAGGCTTCATCATAAACACTTGGTCAGGCTTGTTGGGTATTGTGTGGAGAAAGATGAAAGGCTTCTGGTTTATGAGTACATGAAAAATGGCGCCCTTTATAACCATCTCCATGACAAGAACAACTATGAAAAGAGCAGCAGTGTCATCAACTCTTGGAAGATGAGGATCAAAATTGCTTTAGATGCAGCTAGAGGAATTGAATATCTTCACAACTATGCAGTTCCTCCCATAATCCACAGGGACATCAAATCATCCAACATTCTTCTGGACACGAGCTGGACGGCAAGAGTATCCGACTTCGGGCTGTCATTGATGAGTCCAGGATCAGACCACGATCACCGGCCAATGAAGGCAGCCGGGACGGTTGGCTACATTGATCCTGAGTACTACGGACTAAATGTATTAACAGCAAAGAGTGATGTGTATGGACTTGGGGTAGTATTGTTGGAGCTTTTGACAGGGAAGAGAGCAATATTCAAGGATGATGAAAACGAAGGGACGCTGACCAGTGTGGTGGATTTCGCAGTGCCAGTGATCATGGCCGGAGAGTTGGTGAAGATTTTGGATCATAGGGTCGGGCCGCTGGAGTTGAACGAAACGGAGGCGGTGGAGCTGGTGGCGTATACCGCTATGCACTGTGTGCATTTGGAAGGGAAAGACAGACCAACCATGACAGACATTGTTATTAATTTGGAGCGAGCTTTGGCTATCTGTGATGATAGCCCTGGCAGCAACTCCAGTGGTGGAATTTCCATTGTTTCAGAGTGA 2442 45.5 MTKPPSFSLSFTIITFSLTIFLLLSPSHSLGSASTLAVTSAPATVCGITAGNPTQRILCFQNNQTQNQTISINPNVSFSSISGGRNFFCALRDGGYSLLCWDYNSRNSTFVLKRLYINDTVLLDNLSVGNDQICAMSLGVGNVTCWRGQEGNYVNVNVKFGFPSFDSISSGFGFSCGVLKDFDLVRCWGSDLLIANGIQNGFGNMSILRIFAGGFHVCGFNMSNGLVCKGNNDFGQLEFPSHLAFEFSDLALGERHSCGILQSNGSVVCWGGGGGGFSVDSIRGVSFELIVSGDDFVCGLTRRNLSVLCWGPGWSGNVSVSEVSVELPLPKILPGPCVQSSCSDCGVFPLSQDLCPGPGNVCNRCQPPVSMPPLTPMSPSPSVLPPLVLTPSPPSRTLTRGLLAFAIVGSVGAFAGICTVVYCLWTGVCFGHKKIHNSVQPTITRAASSNGGTTSNNSPPSRSLTIRRQGSRIMRRQRSGTSSKHAERAEEFAFAELAMATNDFSLENKIGAGSFGVVYRGKLLDGREVAIKRGETGAKKKKFQEKESAFDSELAFLSRLHHKHLVRLVGYCVEKDERLLVYEYMKNGALYNHLHDKNNYEKSSSVINSWKMRIKIALDAARGIEYLHNYAVPPIIHRDIKSSNILLDTSWTARVSDFGLSLMSPGSDHDHRPMKAAGTVGYIDPEYYGLNVLTAKSDVYGLGVVLLELLTGKRAIFKDDENEGTLTSVVDFAVPVIMAGELVKILDHRVGPLELNETEAVELVAYTAMHCVHLEGKDRPTMTDIVINLERALAICDDSPGSNSSGGISIVSE 813
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 50860813 50863254 + evm.model.ptg000006l.959 HCH1g0366 538385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0366 813 SUPERFAMILY RCC1/BLIP-II 29 274 IPR009091 -
HCH1g0366 813 Gene3D Phosphorylase Kinase; domain 1 466 584 - -
HCH1g0366 813 SUPERFAMILY Protein kinase-like (PK-like) 487 789 IPR011009 -
HCH1g0366 813 SMART serkin_6 504 793 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH1g0366 813 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 33 803 IPR044815 GO:0004674(InterPro)
HCH1g0366 813 MobiDBLite consensus disorder prediction 446 486 - -
HCH1g0366 813 Pfam Protein kinase domain 505 786 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH1g0366 813 ProSitePatterns Serine/Threonine protein kinases active-site signature. 635 647 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH1g0366 813 ProSiteProfiles Protein kinase domain profile. 504 793 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH1g0366 813 Gene3D - 194 347 IPR009091 -
HCH1g0366 813 ProSitePatterns Protein kinases ATP-binding region signature. 510 532 IPR017441 GO:0005524(InterPro)
HCH1g0366 813 Gene3D Transferase(Phosphotransferase) domain 1 585 799 - -
HCH1g0366 813 MobiDBLite consensus disorder prediction 446 468 - -
HCH1g0366 813 FunFam receptor-like protein kinase FERONIA 468 584 - -
HCH1g0366 813 FunFam Serine/threonine-protein kinase-like protein CCR4 585 806 - -
HCH1g0366 813 Gene3D - 25 191 IPR009091 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g1517 HCH-Chr12:41395376 HCH1g0366 HCH-Chr1:50860813 3.60E-96 dispersed
HCH1g0366 HCH-Chr1:50860813 HCH7g0915 HCH-Chr7:35769243 8.40E-72 dispersed
HCH1g0366 HCH-Chr1:50860813 HCH9g0843 HCH-Chr9:5967702 7.40E-60 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81270 PF00069 Pkinase 1.00E-44 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0366 - - - 0.0