Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH1g0373 | ATGACGATGTTCTTTTTTCCTATTCTCTGTGTTTTTCTATCTACTTTGTTTATTTTCTCTTTCCTCTTTCCCCGAGCATCCAGATTCCGGCGTTTCCGGTTGCCGCCGGGGAACCTGGGTCTGCCGCTGATCGGAGAGACTTTGCAGTTGATCTCTGCTTACAAGACGGAGAATCCAGAACCGTTTATTGATGAGCGGGTGAGGCGGTTCGGACCGGTTTTCACGACGCATTTGTTTGGAGAACCGACGGTTTTCTCTGCCGATTGGGAGACGAACCGGTTTATTCTTCAGAATGAGGAGAAGCTTTTCGAGTGTAGCTACCCCGGTTCGATTTCCAATTTGTTGGGAAGGCATTCTTTGTTGTTGATGAAAGGAAATCTTCATAAACGAATGCATTCCCTCACTATGAGCTTCGCTAATTCCTCGATTATTCGGAACCATCTGTTGGTTGATGTAGACCGGTTGATTCGGCTCAATATGGATTCCTGGACCGGCCGGATTTTCCTCATGGAGGAAGCCAAAAAGATAACTTTTGAGTTAGCAGTGAAGCAACTGATGAGTTTTGATCCATGCGAATGGACAGAGAATTTGATGAAAGAATACCTTCTTGTCATTGAAGGTTTCTTTACCATCCCTTTCCCTCTCTTTTCCTCCACTTACCGCAGAGCCATTCAAGCAAGGAGTAAGGTGGCAGAGGCATTGAGTTTAGTGGTTAGAGAAAGAAGAAAAGAAAGTGAAGAAGGGAAAAGAAAGGAAGACATGCTAGGAGCGCTGCTGGCCGGAGAAGAAGCTCTTTCCGATGAGCAAATAGTTGATTTCTTATTAGCTTTATTGGTGGCCGGATATGAAACCACCTCAACCACCATGACTCTCGCCGTTAAGTTCTTGACGGAGACGCCGCTGGCTTTGGCTCAACTCCAGGATGAACATGAGCAAATCAAAGCAAGGAAGAAAGAATCAGAGGATCTGCAATGGAATGATTACAAGTCCATGCCATTCACCCAATGTGTTGTGAATGAGACCTTAAGAGTTTCCAACATAATCAGTGGGATATTTAGGAGAGCAATGACAGATATCAATATCAAAGGCTATACAATTCCAAAGGGATGGAAGGTCTTTGCTTCATTTCGTGCGGTTCATTTAAACCATGATAATTTTAAAGATGCTCGCTCCTTTAACCCATGGCGATGGCAGCAGAATAGCACAGGCGCAACAAGCACCGTACAATTTACACCCTTTGGAGGCGGCCAAAGGTTATGCCCAGGTTATGAGCTTGCTAGAGTAGAACTCTCCATTTTCCTTCACCACATTGTTACCCGTTTCAGTTGGACTCCTGCAGAAGATGATAAGTTGGTATTTTTTCCAACAACAAGGACACAGAAGCGTTACCCCATCAATGTGATGCCTAAGAAAGATTCTAGGAAATGTAAAGAGAGTATGATCCAGAAAAATACATAA | 1458 | 44.17 | MTMFFFPILCVFLSTLFIFSFLFPRASRFRRFRLPPGNLGLPLIGETLQLISAYKTENPEPFIDERVRRFGPVFTTHLFGEPTVFSADWETNRFILQNEEKLFECSYPGSISNLLGRHSLLLMKGNLHKRMHSLTMSFANSSIIRNHLLVDVDRLIRLNMDSWTGRIFLMEEAKKITFELAVKQLMSFDPCEWTENLMKEYLLVIEGFFTIPFPLFSSTYRRAIQARSKVAEALSLVVRERRKESEEGKRKEDMLGALLAGEEALSDEQIVDFLLALLVAGYETTSTTMTLAVKFLTETPLALAQLQDEHEQIKARKKESEDLQWNDYKSMPFTQCVVNETLRVSNIISGIFRRAMTDINIKGYTIPKGWKVFASFRAVHLNHDNFKDARSFNPWRWQQNSTGATSTVQFTPFGGGQRLCPGYELARVELSIFLHHIVTRFSWTPAEDDKLVFFPTTRTQKRYPINVMPKKDSRKCKESMIQKNT | 485 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 51158760 | 51163026 | - | evm.model.ptg000006l.952 | HCH1g0373 | 538392 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH1g0373 | 485 | PANTHER | CYTOCHROME P450 26 | 33 | 446 | - | GO:0004497(PANTHER)|GO:0007275(PANTHER)|GO:0010268(PANTHER)|GO:0016125(PANTHER)|GO:0016132(PANTHER)|GO:0016491(PANTHER) | |
| HCH1g0373 | 485 | PRINTS | P450 superfamily signature | 336 | 347 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH1g0373 | 485 | PRINTS | P450 superfamily signature | 280 | 297 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH1g0373 | 485 | PRINTS | P450 superfamily signature | 420 | 431 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH1g0373 | 485 | PRINTS | P450 superfamily signature | 411 | 420 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH1g0373 | 485 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 413 | 422 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| HCH1g0373 | 485 | Coils | Coil | 303 | 323 | - | - | |
| HCH1g0373 | 485 | PRINTS | E-class P450 group I signature | 335 | 353 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH1g0373 | 485 | PRINTS | E-class P450 group I signature | 269 | 286 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH1g0373 | 485 | PRINTS | E-class P450 group I signature | 410 | 420 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH1g0373 | 485 | PRINTS | E-class P450 group I signature | 67 | 86 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH1g0373 | 485 | PRINTS | E-class P450 group I signature | 420 | 443 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH1g0373 | 485 | PRINTS | E-class P450 group I signature | 289 | 315 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH1g0373 | 485 | PRINTS | E-class P450 group I signature | 375 | 399 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH1g0373 | 485 | FunFam | Cytochrome P450 90A1 | 24 | 470 | - | - | |
| HCH1g0373 | 485 | Pfam | Cytochrome P450 | 209 | 451 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH1g0373 | 485 | SUPERFAMILY | Cytochrome P450 | 28 | 469 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH1g0373 | 485 | Gene3D | Cytochrome P450 | 25 | 469 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH1g0373 | 485 | CDD | CYP90-like | 66 | 469 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH13g0666 | HCH-Chr13:5296722 | HCH1g0373 | HCH-Chr1:51158760 | 5.90E-78 | dispersed | |
| HCH1g0373 | HCH-Chr1:51158760 | HCH6g0114 | HCH-Chr6:1443161 | 4.10E-98 | dispersed | |
| HCH13g0889 | HCH-Chr13:10014381 | HCH1g0373 | HCH-Chr1:51158760 | 1.30E-85 | transposed | |
| HCH6g1791 | HCH-Chr6:50224219 | HCH1g0373 | HCH-Chr1:51158760 | 9.20E-80 | transposed | |
| HCH1g0373 | HCH-Chr1:51158760 | HCH2g0262 | HCH-Chr2:39136812 | 2.50E-55 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH1g0373 | K09588 | - | csv:101216594 | 762.681 |