Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0387 ATGGCCTCCCTATATCGAGATCGTACGACGGAATTTCAGTCTCTATCAGAGACATTGAAGAAGATCGGAGGAGGAATGGCAGCCGTCATTCCACCTAAAAATGAACCCTCGGCTTCGGCTTCGGCTTCGGCTTCGGCTTCGGCTTCCATACCGTCTGGTTTACGATCCGAATTCAGCAAGAAGGCTTCTAGAATCGGGTTCGGGATCCAAGAAACCTCTCAGAAGATCATAAGGCTTGCTCAATTGGCAAAAAAATCATCAATGTTTGATGATCCAATTAGGGAAATACAGGAAATGACTGCTTTGATAAAGAATGATATTACATCCTTAAATGTGGCTCTCTCCGATTTGCAAACCATCCAAAACATGGAGACGGCAGATGGGAATTATTCAAAAGATAGAGTGGTTCATTCAACAGCTGTCTGTGATGACCTGAAGAGCAAACTTATGGGAGCTACAAAACAGCTTCAAAATGTGTTAACTACGAGAACAGAGAATATCAAGGCCCATGAGAATCGGAGGCAAATATTTTCTGCAAATGCAACCCGTGAAAAACCTTTTCAAAATCAAGCCAAAACTGTAACTCAACCACCGCCATGGTCAAGTAATACACCTGGAAGTGACCAACCACCCATGTCGTCGTCAAATGGAGCTCAACTTAGCGGTCAATTGAGACGAAGGTTAGCTGTTGAGAACACTCCATCCCAGCAAATGGAGATGTCAATGTTACAGCAGGTGGTTCCTAGGCAAGAAAATTATTCACAGAGTCGTGCCGTTGCTCTTCATAATGTGGAATCCACAATTTCAGAACTTGGTGGAATTTTTACACATCTAGCCACTATGGTTGCACATCAAGGTGAACTGGCTATCAGGATCGATGATAACATGGATGAATCACTGGCAAATGTAGAAGGCGCCCGCAGTTCTCTTTTAAGGCATCTTAACCAGATATCATCCAACAGATGGCTTCTAATCAAAATTTTTGCTATCGTAATAATCTTCTTGATGGTATTTATTTTCATGGCATAA 1029 42.57 MASLYRDRTTEFQSLSETLKKIGGGMAAVIPPKNEPSASASASASASASIPSGLRSEFSKKASRIGFGIQETSQKIIRLAQLAKKSSMFDDPIREIQEMTALIKNDITSLNVALSDLQTIQNMETADGNYSKDRVVHSTAVCDDLKSKLMGATKQLQNVLTTRTENIKAHENRRQIFSANATREKPFQNQAKTVTQPPPWSSNTPGSDQPPMSSSNGAQLSGQLRRRLAVENTPSQQMEMSMLQQVVPRQENYSQSRAVALHNVESTISELGGIFTHLATMVAHQGELAIRIDDNMDESLANVEGARSSLLRHLNQISSNRWLLIKIFAIVIIFLMVFIFMA 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 51739662 51743223 - evm.model.ptg000006l.938 HCH1g0387 538406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0387 342 Gene3D - 54 306 - -
HCH1g0387 342 SMART tSNARE_6 246 313 IPR000727 -
HCH1g0387 342 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 251 313 IPR000727 -
HCH1g0387 342 CDD SNARE_syntaxin5 254 339 - -
HCH1g0387 342 PANTHER SYNTAXIN 69 333 IPR045242 GO:0000139(PANTHER)|GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006888(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
HCH1g0387 342 Pfam SNARE domain 288 339 IPR000727 -
HCH1g0387 342 ProSitePatterns Syntaxin / epimorphin family signature. 257 296 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
HCH1g0387 342 SUPERFAMILY t-snare proteins 55 306 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
HCH1g0387 342 MobiDBLite consensus disorder prediction 178 224 - -
HCH1g0387 342 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 6 21 IPR021538 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0387 HCH-Chr1:51739662 HCH4g0394 HCH-Chr4:2578181 1.50E-75 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0387 K08490 - csv:101213786 506.523