Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0389 ATGAAGAGAAGTTTCTACTGTTTTAGTGTTCTTTTGGAATTGGTTGTTGTGCTAACAACGTCAGCTGTTTTTGGTGTGATGGAAGGGAAGAACGACACCGAAAGCGGACGACGAGACGATTTGGATGGTATAAAAAGATTCATCAGTTGGAATGATTTGCAAGTGGAGGAGCATCCGCAGCAAGGTTTGATCAATTCCAGAGATCATAATTTAGATAATGAAACTCGAATCATAATGGTTGATCAAAATGGGACTGGAGATTCACTTACTGTTCAAGGAGCCATTGACATGGTTCCTGATTATAACAAACAAAGGGTTAAGATTTTCATTCTTCCAGGAATTTACAGAGAGAAGGTATTGGTACCATGTACCAAGCCATATATTTCATTAATTGGGAATAAGCGACGAGTTTCAGACACTGTTATCACATGGAATAGCAAAGCTTCAGACAAAGATAGCGATGGAAATGAACTCGGAACATATCGGACCGCGACGGTTTCGATCGAATCCGACTACTTTTGCGCAACTGAAATCACTTTTGAAAACACGGTAGCTGCAGCGCCTGGAGACAATGGAAGGCAAGCAGTGGCTCTTAGAATTACAGGCGACAAGGCCGTGTTTTACAGAGCAAGGTTCATAGGAAAACAAGACACCCTCTTGGACGATATAGGATCTCACTATTTCTACCAATGTCATATTCAAGGAAGTGTTGATTTTATATTTGGAAGAGCTCGATCGCTCTATGAGCAATGTATCATATTTTCCACGGCCGAAAACTATGGAGCGATTGCGGCGCACCATCGAGACTCACCGGATGAGGACACCGGCTTCTCTTTCGTCCGTTGCATAATTACTGGAAGTGGCAAGATCCTATTAGGAAGAGCTTGGGGCAACTATTCAAGAACAATATATTCTTATAGCTATATTGAAGATATCATAACTCCCTCAGGATGGAGCGATTGGAACGACCCGGCAAGACAAAGGACAGCAGTTTTTGGGCAGTATAATTGCAGGGGTGGTGGAGCAAATACAGGAGGTTGGGTTCCATGGGCCAAAACTTTTAGCTATGAGGAAGTGAGACCTTTTCTGGATGTGAAATTTATAGATGGAGAGCAATGGCTTAGTTTATGA 1131 42.35 MKRSFYCFSVLLELVVVLTTSAVFGVMEGKNDTESGRRDDLDGIKRFISWNDLQVEEHPQQGLINSRDHNLDNETRIIMVDQNGTGDSLTVQGAIDMVPDYNKQRVKIFILPGIYREKVLVPCTKPYISLIGNKRRVSDTVITWNSKASDKDSDGNELGTYRTATVSIESDYFCATEITFENTVAAAPGDNGRQAVALRITGDKAVFYRARFIGKQDTLLDDIGSHYFYQCHIQGSVDFIFGRARSLYEQCIIFSTAENYGAIAAHHRDSPDEDTGFSFVRCIITGSGKILLGRAWGNYSRTIYSYSYIEDIITPSGWSDWNDPARQRTAVFGQYNCRGGGANTGGWVPWAKTFSYEEVRPFLDVKFIDGEQWLSL 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 51756649 51758608 + evm.model.ptg000006l.936 HCH1g0389 538408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0389 376 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 35 375 - GO:0030599(PANTHER)|GO:0045490(PANTHER)|GO:0052689(PANTHER)
HCH1g0389 376 SUPERFAMILY Pectin lyase-like 76 375 IPR011050 -
HCH1g0389 376 FunFam Pectinesterase 73 376 - -
HCH1g0389 376 Pfam Pectinesterase 78 370 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
HCH1g0389 376 ProSitePatterns Pectinesterase signature 2. 233 242 IPR033131 -
HCH1g0389 376 Gene3D - 72 376 IPR012334 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g1253 HCH-Chr12:12939272 HCH1g0389 HCH-Chr1:51756649 3.80E-157 dispersed
HCH1g0389 HCH-Chr1:51756649 HCH5g0374 HCH-Chr5:2431254 3.10E-77 dispersed
HCH1g0389 HCH-Chr1:51756649 HCH4g1103 HCH-Chr4:7208766 3.50E-73 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0389 K01051 - csv:101209316 526.939