Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0391 ATGGAGGGAAAGGAAGAAGATGTAAGATTGGGAGCTAACAAGTTCTCAGAGAGGCAGCCAATTGGGACAGCGGCCCAGATCCAAGACGACGATGCAAAGGACTACAAAGAGCCACCACCGGCGCCACTGTTCGAGCCAGAAGAGCTAACTTCATGGTCGTTTTACAGAGCTGGAATTGCTGAATTCATAGCCACTTTCTTATTCCTTTATATAACGATTTTAACTGTCATGGGTGTTAAGAGAACCGACGAAACTCAAGGTAATATGTGTGGAACTGTTGGAATTCAAGGTATTGCTTGGGCTTTTGGTGGTATGATCTTCGCCCTCGTCTATTGCACAGCTGGAATCTCCGGTGGTCATATAAACCCGGCAGTGACGTTGGGGCTGTTTCTAGCGAGGAAGTTGTCGTTGACAAGGACGGTTTACTACATTATCATGCAGTGTCTTGGAGCCATATGCGGTGCTGGTGTTGTCAAGGGTTTCCAGCCCAAACCATATGAGAGACTCGGCGGTGGAGCTAACTCCGTTGCCTCTGGTTACACCAAAGGTTCTGGTCTCGGCGCTGAGATCGTTGGAACTTTTGTTCTTGTTTACACTGTTTTCTCTGCCACTGATGCTAAGCGTAGCGCTAGAGACTCTCATGTTCCTATTTTGGCACCGTTGCCAATTGGGTTTGCTGTTTTCTTGGTGCATTTGGCTACAATTCCCGTTACCGGCACCGGAATCAACCCTGCCCGGAGTTTGGGTGCAGCCATTGTTTTCAACCAAGAGGGTGGCTGGGATGACCACTGGATTTTCTGGGTTGGACCATTCATCGGTGCAGCATTGGCAGCATTTTACCACCAAGTGGTGATCAGAGCCATTCCCTTCAAGTCCAAGAGTTGA 885 48.7 MEGKEEDVRLGANKFSERQPIGTAAQIQDDDAKDYKEPPPAPLFEPEELTSWSFYRAGIAEFIATFLFLYITILTVMGVKRTDETQGNMCGTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTLGLFLARKLSLTRTVYYIIMQCLGAICGAGVVKGFQPKPYERLGGGANSVASGYTKGSGLGAEIVGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPVTGTGINPARSLGAAIVFNQEGGWDDHWIFWVGPFIGAALAAFYHQVVIRAIPFKSKS 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 51794234 51796227 + evm.model.ptg000006l.934 HCH1g0391 538410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0391 294 ProSitePatterns MIP family signature. 120 128 IPR022357 -
HCH1g0391 294 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 5 292 IPR034294 GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0009414(PANTHER)|GO:0009506(PANTHER)|GO:0015250(PANTHER)
HCH1g0391 294 Gene3D Glycerol uptake facilitator protein. 41 293 IPR023271 -
HCH1g0391 294 CDD MIP 56 284 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH1g0391 294 PRINTS Major intrinsic protein family signature 264 284 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH1g0391 294 PRINTS Major intrinsic protein family signature 102 126 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH1g0391 294 PRINTS Major intrinsic protein family signature 224 246 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH1g0391 294 PRINTS Major intrinsic protein family signature 139 158 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH1g0391 294 PRINTS Major intrinsic protein family signature 56 75 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH1g0391 294 PRINTS Major intrinsic protein family signature 188 206 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH1g0391 294 Pfam Major intrinsic protein 48 281 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH1g0391 294 FunFam Probable aquaporin PIP1-2 41 294 - -
HCH1g0391 294 NCBIfam MIP family channel protein 60 281 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH1g0391 294 SUPERFAMILY Aquaporin-like 47 286 IPR023271 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0391 HCH-Chr1:51794234 HCH5g0521 HCH-Chr5:3561664 7.60E-140 dispersed
HCH1g0391 HCH-Chr1:51794234 HCH1g0392 HCH-Chr1:51802537 4.00E-157 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0391 K09872 - csv:101215145 537.339