Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0392 ATGGAAGGAAAGGAAGAAGATGTAAGATTGGGAGCTAACAAGTTTAACGAGAGGCAGCCAATTGGGACGGCGGCGCAGAGCCAAGACGACGCGAAGGACTACAAAGAGCCACCACCGGCGCCGCTGTTCGAGCCAGAAGAGCTAACTTCATGGTCGTTTTACAGAGCCGGAATCGCTGAATTCATAGCCACTTTCTTATTCCTTTATATAACGGTTTTAACTGTCATGGGTGTTAAGAGAACAAACGAAGCTCAGGGTAATATGTGTGGAACCGTTGGAATTCAAGGAATTGCTTGGGCTTTTGGTGGTATGATCTTCGCCCTCGTCTACTGCACTGCTGGAATCTCCGGTGGTCATATTAACCCAGCGGTGACTTTTGGGCTGTTTTTGGCGAGGAAGTTGTCGTTGACAAGGGCGATATTCTACATAGTGATGCAGTGTCTTGGAGCCATATGTGGCGCTGGTGTTGTCAAGGGTTTCCAGCCCAGACCATATGAGAGACTCGGCGGTGGGGCTAACGCCGTCGCCTCTGGTTACACCAAAGGCTCTGGTCTTGGCGCTGAGATCGTTGGTACTTTTGTTCTTGTTTACACTGTTTTCTCTGCCACTGATGCTAAACGTAGCGCTAGAGACTCTCATGTTCCTATTTTGGCTCCCTTGCCAATTGGGTTCGCTGTTTTCTTGGTGCATTTGGCTACTATTCCCATTACTGGTACTGGTATTAACCCTGCTAGGAGTTTGGGTGCTGCTATCATTTTCAACAAGGAAGATAACGGCTGGGAGAACCATTGGATTTTCTGGGTTGGACCATTCATCGGGGCAGCACTCGCAGCTTTATATCACCAAGTGGTGATCCGAGCCATTCCCTTCAAATCCAAGTGA 882 48.75 MEGKEEDVRLGANKFNERQPIGTAAQSQDDAKDYKEPPPAPLFEPEELTSWSFYRAGIAEFIATFLFLYITVLTVMGVKRTNEAQGNMCGTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYIVMQCLGAICGAGVVKGFQPRPYERLGGGANAVASGYTKGSGLGAEIVGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKEDNGWENHWIFWVGPFIGAALAALYHQVVIRAIPFKSK 293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 51802537 51803963 + evm.model.ptg000006l.933 HCH1g0392 538411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0392 293 SUPERFAMILY Aquaporin-like 46 286 IPR023271 -
HCH1g0392 293 CDD MIP 55 284 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH1g0392 293 PRINTS Major intrinsic protein family signature 55 74 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH1g0392 293 PRINTS Major intrinsic protein family signature 223 245 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH1g0392 293 PRINTS Major intrinsic protein family signature 264 284 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH1g0392 293 PRINTS Major intrinsic protein family signature 101 125 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH1g0392 293 PRINTS Major intrinsic protein family signature 138 157 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH1g0392 293 PRINTS Major intrinsic protein family signature 187 205 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH1g0392 293 MobiDBLite consensus disorder prediction 1 39 - -
HCH1g0392 293 FunFam Probable aquaporin PIP1-2 40 293 - -
HCH1g0392 293 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 5 292 IPR034294 GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0009414(PANTHER)|GO:0009506(PANTHER)|GO:0015250(PANTHER)
HCH1g0392 293 Gene3D Glycerol uptake facilitator protein. 40 292 IPR023271 -
HCH1g0392 293 Pfam Major intrinsic protein 47 281 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH1g0392 293 NCBIfam MIP family channel protein 59 281 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH1g0392 293 ProSitePatterns MIP family signature. 119 127 IPR022357 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0392 HCH-Chr1:51802537 HCH5g0521 HCH-Chr5:3561664 2.00E-140 dispersed
HCH1g0391 HCH-Chr1:51794234 HCH1g0392 HCH-Chr1:51802537 4.00E-157 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0392 K09872 - csv:101215145 551.977