Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH1g0439 | ATGGCAAATCCATGGTGGGCTGAAAATGTACCCTTCAGAGGTGTGGATTCTATGTCCTCAGCCAACCCAACCGCCACAGATAGTAGCACCAGCAACCCTTATTCCACTCCACGAAAACAAAGCCTTGATGCCGATGATGATAGCCGAGAAAATTATCAGGAACTCGATGAACCCAACTCTGGAAGCCATGATAGGGCTGAACTGGGTAGTAGCTCGAGTACTCGTCGTCCTCGTGGCCGTCCTGCTGGGTCAAAAAACAAGCTGAAACCACCGGTTGTGGTTACGAAGGAGAGTCCCGACGCCCTACGGAGCCATGTCTTGGAAATTGGCAGTGGCAGTGATATTGTTGAGAGCATCTCCAACTTTGCACAACGCCGGCAGCGTGGCGTCTCGGTTTTAAGTGGCAGCGGCATTGTCGCCAATGTTACTCTTCGGCATCCTGGTGCCCCTGGCGGCGTCATTACACTGCAAGGACGATTCGACATATTATCCCTTTCGGGTTCTTTCTTGCCTGCTCCTGCTCCTCCTGGGGCTACTGGGTTAACGGTCTACTTAGCTGGTGGGCAGGGCCAGGTTGTTGGTGGCATTGTTGTCGGTACGCTCGTGGCGACTGGTCCGGTCATTGTGATTGCAGCGACCTTTACGAACGCGACATTTGAACGATTGCCGCTTGAGGATGAAGAGGAAGCCGGTGAGGGAATGCAATTACAGCAGCAGTCAGGTGTTAATTCAGGAACTAGTGCGAATTCAACATCTCAGAGTTTGGGTGAACAGCCACCTTCAATGCCTATCTACAATATGCCTCCAAATTTGATACCAAATGGTCAGGTTTCTCATGATGTGTTTTGGAGTCCTTCTCGAGCCCCGCCGCCGTACTAA | 879 | 51.76 | MANPWWAENVPFRGVDSMSSANPTATDSSTSNPYSTPRKQSLDADDDSRENYQELDEPNSGSHDRAELGSSSSTRRPRGRPAGSKNKLKPPVVVTKESPDALRSHVLEIGSGSDIVESISNFAQRRQRGVSVLSGSGIVANVTLRHPGAPGGVITLQGRFDILSLSGSFLPAPAPPGATGLTVYLAGGQGQVVGGIVVGTLVATGPVIVIAATFTNATFERLPLEDEEEAGEGMQLQQQSGVNSGTSANSTSQSLGEQPPSMPIYNMPPNLIPNGQVSHDVFWSPSRAPPPY | 292 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 52797627 | 52798505 | + | evm.model.ptg000006l.886 | HCH1g0439 | 538458 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH1g0439 | 292 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 103 | 215 | IPR005175 | - | |
| HCH1g0439 | 292 | MobiDBLite | consensus disorder prediction | 1 | 97 | - | - | |
| HCH1g0439 | 292 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 | 35 | 291 | IPR014476 | GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
| HCH1g0439 | 292 | MobiDBLite | consensus disorder prediction | 233 | 260 | - | - | |
| HCH1g0439 | 292 | ProSiteProfiles | PPC domain profile profile. | 99 | 237 | IPR005175 | - | |
| HCH1g0439 | 292 | PIRSF | ESCAROLA | 16 | 291 | IPR014476 | GO:0003680(InterPro) | |
| HCH1g0439 | 292 | CDD | DUF296 | 103 | 186 | IPR005175 | - | |
| HCH1g0439 | 292 | FunFam | AT-hook motif nuclear-localized protein | 102 | 229 | - | - | |
| HCH1g0439 | 292 | Gene3D | - | 102 | 238 | - | - | |
| HCH1g0439 | 292 | MobiDBLite | consensus disorder prediction | 40 | 63 | - | - | |
| HCH1g0439 | 292 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 100 | 228 | - | - | |
| HCH1g0439 | 292 | MobiDBLite | consensus disorder prediction | 15 | 39 | - | - | |
| HCH1g0439 | 292 | MobiDBLite | consensus disorder prediction | 64 | 79 | - | - | |
| HCH1g0439 | 292 | MobiDBLite | consensus disorder prediction | 226 | 292 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH1g0439 | HCH-Chr1:52797627 | HCH7g1306 | HCH-Chr7:46002643 | 2.30E-64 | dispersed | |
| HCH1g0439 | HCH-Chr1:52797627 | HCH13g0503 | HCH-Chr13:3538028 | 6.30E-78 | wgd |
Pathway information