Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0441 ATGACAGGCCTTGCCTCTTCATGTGGTGCCTGTAAGTTTTTGAGGAGAAAATGCACCAATCAATGTGTTTTTTCCCCTTACTTCAGCTATGATGAAGCAGCTTCCCACTTTGCAGCAGTTCACAAAGTCTTTGGAGCTAGTAATGTCTCTAAGTTGCTCTTACACCTTCCCCTTCATAACCGAAGCGATGCCGCCATTTCGATTGCTTATGAAGCTCTCGAACGGATGAGAGATCCTACTTATGGTTGTGTTGCTCATATATTCGCATTGCAGCAAGAGGTTGCCAGCTTGCAGGAGGAGATAGAAATGCTGGGAAGCCAAATAGCCAATTTTGCAGCTGGTTGTGTGAGTTCTGCAGCAGCTAAAAACCCCATTAATGAGTTTCAACAGCTGCATGATTGTGAAATGAACATAGATAATAACTATGAGAGCCAGTTAAATCCAGAGATGCTCCACCAAAATTTCAATGGCCAAACAGATTCACAGATCTCTCCTTGCAGCTCCTTTGCTTTGGGAGATCAAGAGCTTCTCGGTGGCTGTAATCTTGTGGATGGATTGCCCTTTGACATTGGAATGCTTGAGAACTTTGCTTGTTTTCCATGGTAG 606 43.89 MTGLASSCGACKFLRRKCTNQCVFSPYFSYDEAASHFAAVHKVFGASNVSKLLLHLPLHNRSDAAISIAYEALERMRDPTYGCVAHIFALQQEVASLQEEIEMLGSQIANFAAGCVSSAAAKNPINEFQQLHDCEMNIDNNYESQLNPEMLHQNFNGQTDSQISPCSSFALGDQELLGGCNLVDGLPFDIGMLENFACFPW 201
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 52819006 52820056 - evm.model.ptg000006l.884 HCH1g0441 538460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0441 201 Coils Coil 87 107 - -
HCH1g0441 201 Pfam Lateral organ boundaries (LOB) domain 7 103 IPR004883 -
HCH1g0441 201 ProSiteProfiles LOB domain profile. 6 108 IPR004883 -
HCH1g0441 201 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 149 - GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0441 HCH-Chr1:52819006 HCH5g1304 HCH-Chr5:49201071 2.80E-37 dispersed
HCH1g0441 HCH-Chr1:52819006 HCH8g1410 HCH-Chr8:48776485 1.00E-26 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33051 PF03195 LOB 7.30E-35 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0441 K13945 - csv:101204875 230.335