Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0451 ATGTCTCCCATTTCTCTCTTCACTATTCTCTTATTCATCTCGTTCTCACTCTTCGCCGTTGAAGCTAGAATCCCCGGAGTTTACGGCGTCGGCGAATGGCAGACCGCTCATGCCACTTTCTATGGTGGCAGTGATGCTTCTGGAACTATGGGAGGGGCGTGTGGGTACGGAAACTTGTACAGTCAAGGGTACGGCGTGAACACGGCGGCGCTAAGCACTGCTTTGTTCAACAATGGTTTGAGCTGCGGGGCTTGTTTTGAGCTGAAGTGTGCTAATGATCCACAGTGGTGTCATTCCGGCAGCCCGTCGATATTGATAACGGCGACCAACTTTTGCCCGCCGAACTACGCTCTTCCAAGCGATAATGGCGGGTGGTGTAACCCTCCTCGTACTCATTTCGATCTCGCCATGCCAATGTTTCTCAAGATCGCTGAGTATAGAGCCGGAATTGTTCCCGTCTCTTACCGCCGGGTGCCATGCCGGAAGCAAGGAGGAATCAGGTTCACAATCAACGGCTTCAGATACTTCAATTTGGTATTGATAACAAACGTGGCAGGCGCAGGAGACATCGTGAAGGTGAGCGTGAAAGGCACCAACACCCAATGGATGAGCTTGAGCCGTAATTGGGGGCAAAATTGGCAGTCAAACTCCGTTTTGGTTGGTCAGTCACTTTCATTCAGGGTCACAGCCAGTGACCGCCGCACCTCCACTTCATGGAATATCGTTCCTTCCAATTGGCAATTCGGCCAAACTTTTACCGGGAAAAATTTCAGGGTCTAA 780 51.03 MSPISLFTILLFISFSLFAVEARIPGVYGVGEWQTAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCANDPQWCHSGSPSILITATNFCPPNYALPSDNGGWCNPPRTHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVKVSVKGTNTQWMSLSRNWGQNWQSNSVLVGQSLSFRVTASDRRTSTSWNIVPSNWQFGQTFTGKNFRV 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 53033480 53035412 + evm.model.ptg000006l.874 HCH1g0451 538470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0451 259 Gene3D - 24 161 IPR036908 -
HCH1g0451 259 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 175 254 IPR007117 -
HCH1g0451 259 PANTHER EXPANSIN-A15 6 257 IPR002963 GO:0009664(InterPro)
HCH1g0451 259 SUPERFAMILY PHL pollen allergen 162 254 IPR036749 -
HCH1g0451 259 PRINTS Expansin signature 90 101 IPR002963 GO:0009664(InterPro)
HCH1g0451 259 PRINTS Expansin signature 211 232 IPR002963 GO:0009664(InterPro)
HCH1g0451 259 PRINTS Expansin signature 140 153 IPR002963 GO:0009664(InterPro)
HCH1g0451 259 PRINTS Expansin signature 240 256 IPR002963 GO:0009664(InterPro)
HCH1g0451 259 PRINTS Expansin signature 123 140 IPR002963 GO:0009664(InterPro)
HCH1g0451 259 PRINTS Expansin signature 164 176 IPR002963 GO:0009664(InterPro)
HCH1g0451 259 PRINTS Expansin signature 176 197 IPR002963 GO:0009664(InterPro)
HCH1g0451 259 PRINTS Expansin signature 63 77 IPR002963 GO:0009664(InterPro)
HCH1g0451 259 PRINTS Expansin signature 104 114 IPR002963 GO:0009664(InterPro)
HCH1g0451 259 Pfam Lytic transglycolase 68 155 IPR009009 -
HCH1g0451 259 SMART dpbb_1 68 155 IPR007112 -
HCH1g0451 259 CDD DPBB_EXPA_N 32 160 - -
HCH1g0451 259 PRINTS Expansin/Lol pI family signature 202 216 IPR007118 GO:0005576(InterPro)
HCH1g0451 259 PRINTS Expansin/Lol pI family signature 32 47 IPR007118 GO:0005576(InterPro)
HCH1g0451 259 PRINTS Expansin/Lol pI family signature 72 90 IPR007118 GO:0005576(InterPro)
HCH1g0451 259 PRINTS Expansin/Lol pI family signature 148 164 IPR007118 GO:0005576(InterPro)
HCH1g0451 259 PRINTS Expansin/Lol pI family signature 240 254 IPR007118 GO:0005576(InterPro)
HCH1g0451 259 PRINTS Expansin/Lol pI family signature 50 68 IPR007118 GO:0005576(InterPro)
HCH1g0451 259 FunFam Expansin 165 257 - -
HCH1g0451 259 Pfam Expansin C-terminal domain 166 243 IPR007117 -
HCH1g0451 259 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 51 165 IPR007112 -
HCH1g0451 259 FunFam Expansin 22 161 - -
HCH1g0451 259 SUPERFAMILY Barwin-like endoglucanases 32 183 IPR036908 -
HCH1g0451 259 Gene3D - 165 257 IPR036749 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0451 HCH-Chr1:53033480 HCH1g0914 HCH-Chr1:57522355 3.80E-103 dispersed
HCH9g0288 HCH-Chr9:1772104 HCH1g0451 HCH-Chr1:53033480 3.60E-85 transposed
HCH1g0451 HCH-Chr1:53033480 HCH13g0492 HCH-Chr13:3426508 3.30E-123 wgd
HCH1g0451 HCH-Chr1:53033480 HCH2g1077 HCH-Chr2:53739421 1.70E-135 wgd
HCH1g0451 HCH-Chr1:53033480 HCH3g1367 HCH-Chr3:51405928 6.10E-133 wgd
HCH1g0451 HCH-Chr1:53033480 HCH9g0677 HCH-Chr9:4503623 1.30E-135 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0451 - - - 0.0