Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0460 ATGGCTGATGGTGAGGATATTCAGCCTCTTGTGTGTGATAATGGGACAGGAATGGTTAAGGCTGGGTTTGCCGGAGATGATGCTCCAAGAGCCGTGTTTCCTAGTATTGTAGGTCGTCCTCGTCACACTGGCGTGATGGTTGGCATGGGCCAGAAAGATGCTTATGTTGGTGATGAGGCTCAATCCAAGCGTGGTATTTTGACTTTGAAATATCCAATTGAGCATGGTATTGTTAGCAACTGGGATGATATGGAAAAGATTTGGCATCATACCTTCTATAATGAGCTTCGTGTTGCCCCAGAGGAGCACCCTGTTCTCCTAACAGAGGCTCCTCTTAACCCTAAGGCTAATCGTGAGAAGATGACACAAATCATGTTCGAGACCTTTAATACCCCAGCTATGTATGTTGCCATTCAAGCTGTTCTTTCCCTGTATGCAAGTGGTCGTACAACTGGTATTGTGTTGGACTCTGGTGATGGTGTCAGTCATACTGTTCCTATATACGAGGGATATGCCCTCCCACACGCCATCCTTCGTCTCGACCTGGCAGGCCGTGATCTCACTGATCACTTGATGAAAATTCTCACTGAACGTGGATACTCTTTCACCACAACTGCCGAGCGTGAAATTGTGAGGGATATGAAAGAGAAATTGGCATATATTGCCCTTGACTATGAACAAGAAATGGAGACATCCAAGAGCAGCTCATCCGTGGAAAAGAGCTACGAATTGCCGGATGGACAGGTCATCACAATTGGTGCAGAGCGATTCAGATGTCCAGAGGTTCTTTTCCAACCATCCATGATTGGAATGGAAGCAGCAGGCATTCATGAGACGACGTATAACTCGATAATGAAGTGTGATGTTGATATCAGAAAGGACCTATATGGCAACATTGTCCTCTCTGGTGGTTCAACTATGTTCCCCGGCATTGCTGATAGAATGAGCAAGGAAATTTCCGCCCTCGCTCCTAGCAGCATGAAGATAAAGGTAGTGGCTCCACCCGAGAGAAAGTATAGTGTCTGGATCGGGGGCTCCATTTTGGCATCCCTTAGCACCTTCCAACAGATGTGGATTGCGAAAGCAGAGTATGATGAATCTGGACCATCAATTGTGCACAGGAAATGCTTCTAA 1134 46.38 MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDHLMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQEMETSKSSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 53127396 53129117 - evm.model.ptg000006l.865 HCH1g0460 538479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0460 377 FunFam Actin, alpha skeletal muscle 3 167 - -
HCH1g0460 377 SUPERFAMILY Actin-like ATPase domain 149 377 IPR043129 -
HCH1g0460 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
HCH1g0460 377 Gene3D - 10 371 - -
HCH1g0460 377 FunFam Actin, alpha skeletal muscle 331 377 - -
HCH1g0460 377 PANTHER ACTIN 8 369 IPR004000 GO:0005737(PANTHER)
HCH1g0460 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
HCH1g0460 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
HCH1g0460 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
HCH1g0460 377 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
HCH1g0460 377 SMART actin_3 7 377 IPR004000 -
HCH1g0460 377 Gene3D - 140 340 - -
HCH1g0460 377 FunFam Actin, alpha skeletal muscle 255 330 - -
HCH1g0460 377 FunFam Actin, muscle 182 273 - -
HCH1g0460 377 PRINTS Actin signature 51 62 IPR004000 -
HCH1g0460 377 PRINTS Actin signature 238 254 IPR004000 -
HCH1g0460 377 PRINTS Actin signature 63 85 IPR004000 -
HCH1g0460 377 PRINTS Actin signature 142 161 IPR004000 -
HCH1g0460 377 PRINTS Actin signature 28 37 IPR004000 -
HCH1g0460 377 PRINTS Actin signature 117 130 IPR004000 -
HCH1g0460 377 Pfam Actin 5 377 IPR004000 -
HCH1g0460 377 Gene3D Actin; Chain A, domain 4 182 273 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0460 HCH-Chr1:53127396 HCH2g0230 HCH-Chr2:31635800 7.80E-214 dispersed
HCH13g0956 HCH-Chr13:13912491 HCH1g0460 HCH-Chr1:53127396 4.70E-97 transposed
HCH6g0917 HCH-Chr6:43898004 HCH1g0460 HCH-Chr1:53127396 2.60E-33 transposed
HCH8g1184 HCH-Chr8:47346384 HCH1g0460 HCH-Chr1:53127396 2.40E-73 transposed
HCH4g1204 HCH-Chr4:8080796 HCH1g0460 HCH-Chr1:53127396 8.60E-53 transposed
HCH1g0460 HCH-Chr1:53127396 HCH13g0483 HCH-Chr13:3360530 5.80E-217 wgd
HCH1g0460 HCH-Chr1:53127396 HCH2g1089 HCH-Chr2:53797478 3.20E-215 wgd
HCH1g0460 HCH-Chr1:53127396 HCH9g0669 HCH-Chr9:4441415 4.90E-216 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0460 K10355 - csv:101220611 737.258