Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0460 ATGGCTGATGGTGAGGATATTCAGCCTCTTGTGTGTGATAATGGGACAGGAATGGTTAAGGCTGGGTTTGCCGGAGATGATGCTCCAAGAGCCGTGTTTCCTAGTATTGTAGGTCGTCCTCGTCACACTGGCGTGATGGTTGGCATGGGCCAGAAAGATGCTTATGTTGGTGATGAGGCTCAATCCAAGCGTGGTATTTTGACTTTGAAATATCCAATTGAGCATGGTATTGTTAGCAACTGGGATGATATGGAAAAGATTTGGCATCATACCTTCTATAATGAGCTTCGTGTTGCCCCAGAGGAGCACCCTGTTCTCCTAACAGAGGCTCCTCTTAACCCTAAGGCTAATCGTGAGAAGATGACACAAATCATGTTCGAGACCTTTAATACCCCAGCTATGTATGTTGCCATTCAAGCTGTTCTTTCCCTGTATGCAAGTGGTCGTACAACTGGTATTGTGTTGGACTCTGGTGATGGTGTCAGTCATACTGTTCCTATATACGAGGGATATGCCCTCCCACACGCCATCCTTCGTCTCGACCTGGCAGGCCGTGATCTCACTGATCACTTGATGAAAATTCTCACTGAACGTGGATACTCTTTCACCACAACTGCCGAGCGTGAAATTGTGAGGGATATGAAAGAGAAATTGGCATATATTGCCCTTGACTATGAACAAGAAATGGAGACATCCAAGAGCAGCTCATCCGTGGAAAAGAGCTACGAATTGCCGGATGGACAGGTCATCACAATTGGTGCAGAGCGATTCAGATGTCCAGAGGTTCTTTTCCAACCATCCATGATTGGAATGGAAGCAGCAGGCATTCATGAGACGACGTATAACTCGATAATGAAGTGTGATGTTGATATCAGAAAGGACCTATATGGCAACATTGTCCTCTCTGGTGGTTCAACTATGTTCCCCGGCATTGCTGATAGAATGAGCAAGGAAATTTCCGCCCTCGCTCCTAGCAGCATGAAGATAAAGGTAGTGGCTCCACCCGAGAGAAAGTATAGTGTCTGGATCGGGGGCTCCATTTTGGCATCCCTTAGCACCTTCCAACAGATGTGGATTGCGAAAGCAGAGTATGATGAATCTGGACCATCAATTGTGCACAGGAAATGCTTCTAA 1134 46.38 MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDHLMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQEMETSKSSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 53127396 53129117 - evm.model.ptg000006l.865 HCH1g0460 538479

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0460 377 FunFam Actin, alpha skeletal muscle 3 167 - -
HCH1g0460 377 SUPERFAMILY Actin-like ATPase domain 149 377 IPR043129 -
HCH1g0460 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
HCH1g0460 377 Gene3D - 10 371 - -
HCH1g0460 377 FunFam Actin, alpha skeletal muscle 331 377 - -
HCH1g0460 377 PANTHER ACTIN 8 369 IPR004000 GO:0005737(PANTHER)
HCH1g0460 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
HCH1g0460 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
HCH1g0460 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
HCH1g0460 377 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
HCH1g0460 377 SMART actin_3 7 377 IPR004000 -
HCH1g0460 377 Gene3D - 140 340 - -
HCH1g0460 377 FunFam Actin, alpha skeletal muscle 255 330 - -
HCH1g0460 377 FunFam Actin, muscle 182 273 - -
HCH1g0460 377 PRINTS Actin signature 51 62 IPR004000 -
HCH1g0460 377 PRINTS Actin signature 238 254 IPR004000 -
HCH1g0460 377 PRINTS Actin signature 63 85 IPR004000 -
HCH1g0460 377 PRINTS Actin signature 142 161 IPR004000 -
HCH1g0460 377 PRINTS Actin signature 28 37 IPR004000 -
HCH1g0460 377 PRINTS Actin signature 117 130 IPR004000 -
HCH1g0460 377 Pfam Actin 5 377 IPR004000 -
HCH1g0460 377 Gene3D Actin; Chain A, domain 4 182 273 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0460 K10355 - - csv:101220611 737.258
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0460 HCH-Chr1:53127396 HCH2g0230 HCH-Chr2:31635800 7.80E-214 dispersed
HCH13g0956 HCH-Chr13:13912491 HCH1g0460 HCH-Chr1:53127396 4.70E-97 transposed
HCH6g0917 HCH-Chr6:43898004 HCH1g0460 HCH-Chr1:53127396 2.60E-33 transposed
HCH8g1184 HCH-Chr8:47346384 HCH1g0460 HCH-Chr1:53127396 2.40E-73 transposed
HCH4g1204 HCH-Chr4:8080796 HCH1g0460 HCH-Chr1:53127396 8.60E-53 transposed
HCH1g0460 HCH-Chr1:53127396 HCH13g0483 HCH-Chr13:3360530 5.80E-217 wgd
HCH1g0460 HCH-Chr1:53127396 HCH2g1089 HCH-Chr2:53797478 3.20E-215 wgd
HCH1g0460 HCH-Chr1:53127396 HCH9g0669 HCH-Chr9:4441415 4.90E-216 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH2g1089 . 1 377 Cytoskeleton Gene Families AT2G37620 96.8 4.1e-215 743.8
HCH9g0669 . 1 377 Cytoskeleton Gene Families AT2G37620 96.6 1.2e-214 742.3
HCH1g0460 . 1 377 Cytoskeleton Gene Families AT2G37620 96.0 1.0e-213 739.2
HCH13g0483 . 1 377 Cytoskeleton Gene Families AT2G37620 96.0 2.3e-213 738.0
HCH14g0151 . 1 377 Cytoskeleton Gene Families AT2G37620 95.5 2.3e-213 738.0
HCH2g0230 . 1 377 Cytoskeleton Gene Families AT2G37620 95.5 2.3e-213 738.0
HCH4g1896 . 1 377 Cytoskeleton Gene Families AT2G37620 94.7 1.5e-212 735.3
HCH1g0460 . 1 377 Cytoskeleton Gene Families AT5G59370 96.8 1.2e-214 742.3
HCH13g0483 . 1 377 Cytoskeleton Gene Families AT5G59370 96.8 6.0e-214 740.0
HCH9g0669 . 1 377 Cytoskeleton Gene Families AT5G59370 96.3 1.1e-212 735.7
HCH2g1089 . 1 377 Cytoskeleton Gene Families AT5G59370 96.3 1.9e-212 734.9
HCH4g1896 . 1 377 Cytoskeleton Gene Families AT5G59370 94.2 2.4e-210 728.0
HCH14g0151 . 1 377 Cytoskeleton Gene Families AT5G59370 94.4 3.1e-210 727.6
HCH2g0230 . 1 377 Cytoskeleton Gene Families AT5G59370 94.4 3.1e-210 727.6
HCH1g0460 . 1 377 Cytoskeleton Gene Families AT3G46520 97.1 5.4e-215 743.4
HCH13g0483 . 1 377 Cytoskeleton Gene Families AT3G46520 97.1 2.7e-214 741.1
HCH9g0669 . 1 377 Cytoskeleton Gene Families AT3G46520 96.6 5.1e-213 736.9
HCH2g1089 . 1 377 Cytoskeleton Gene Families AT3G46520 96.6 8.7e-213 736.1
HCH4g1896 . 1 377 Cytoskeleton Gene Families AT3G46520 94.4 1.1e-210 729.2
HCH14g0151 . 1 377 Cytoskeleton Gene Families AT3G46520 94.7 1.4e-210 728.8
HCH2g0230 . 1 377 Cytoskeleton Gene Families AT3G46520 94.7 1.4e-210 728.8
HCH1g0460 . 1 377 Cytoskeleton Gene Families AT3G12110 97.1 8.4e-216 746.1
HCH2g1089 . 1 377 Cytoskeleton Gene Families AT3G12110 96.8 1.6e-214 741.9
HCH9g0669 . 1 377 Cytoskeleton Gene Families AT3G12110 96.8 1.6e-214 741.9
HCH13g0483 . 1 377 Cytoskeleton Gene Families AT3G12110 96.6 2.7e-214 741.1
HCH4g1896 . 1 377 Cytoskeleton Gene Families AT3G12110 95.5 6.6e-213 736.5
HCH14g0151 . 1 377 Cytoskeleton Gene Families AT3G12110 95.5 8.7e-213 736.1
HCH2g0230 . 1 377 Cytoskeleton Gene Families AT3G12110 95.5 8.7e-213 736.1
HCH14g0151 . 1 377 Cytoskeleton Gene Families AT3G18780 93.1 4.4e-209 723.8
HCH2g0230 . 1 377 Cytoskeleton Gene Families AT3G18780 93.1 4.4e-209 723.8
HCH9g0669 . 1 377 Cytoskeleton Gene Families AT3G18780 92.8 7.6e-209 723.0
HCH13g0483 . 1 377 Cytoskeleton Gene Families AT3G18780 92.6 1.3e-208 722.2
HCH2g1089 . 1 377 Cytoskeleton Gene Families AT3G18780 92.3 1.3e-208 722.2
HCH1g0460 . 1 377 Cytoskeleton Gene Families AT3G18780 92.0 2.9e-208 721.1
HCH4g1896 . 1 377 Cytoskeleton Gene Families AT3G18780 91.8 1.4e-207 718.8
HCH14g0151 . 1 377 Cytoskeleton Gene Families AT1G49240 93.4 1.5e-209 725.3
HCH2g0230 . 1 377 Cytoskeleton Gene Families AT1G49240 93.4 1.5e-209 725.3
HCH13g0483 . 1 377 Cytoskeleton Gene Families AT1G49240 92.8 4.4e-209 723.8
HCH2g1089 . 1 377 Cytoskeleton Gene Families AT1G49240 92.6 4.4e-209 723.8
HCH1g0460 . 1 377 Cytoskeleton Gene Families AT1G49240 92.3 9.9e-209 722.6
HCH9g0669 . 1 377 Cytoskeleton Gene Families AT1G49240 92.6 1.7e-208 721.8
HCH4g1896 . 1 377 Cytoskeleton Gene Families AT1G49240 92.0 4.9e-208 720.3
HCH14g0151 . 1 377 Cytoskeleton Gene Families AT5G09810 98.4 7.6e-217 749.6
HCH2g0230 . 1 377 Cytoskeleton Gene Families AT5G09810 98.4 7.6e-217 749.6
HCH1g0460 . 1 377 Cytoskeleton Gene Families AT5G09810 96.6 4.6e-214 740.3
HCH2g1089 . 1 377 Cytoskeleton Gene Families AT5G09810 96.3 1.0e-213 739.2
HCH9g0669 . 1 377 Cytoskeleton Gene Families AT5G09810 96.0 3.0e-213 737.6
HCH13g0483 . 1 377 Cytoskeleton Gene Families AT5G09810 95.8 6.6e-213 736.5
HCH4g1896 . 1 377 Cytoskeleton Gene Families AT5G09810 95.8 8.7e-213 736.1
HCH10g0506 . 1 133 Cytoskeleton Gene Families AT2G19760 77.4 8.0e-57 216.5
HCH10g0505 . 3 132 Cytoskeleton Gene Families AT2G19760 74.6 2.0e-55 211.8
HCH6g0143 . 1 129 Cytoskeleton Gene Families AT2G19760 69.0 2.3e-51 198.4
HCH10g0506 . 1 133 Cytoskeleton Gene Families AT4G29350 76.7 3.1e-56 214.5
HCH10g0505 . 3 132 Cytoskeleton Gene Families AT4G29350 75.4 9.8e-55 209.5
HCH6g0143 . 1 130 Cytoskeleton Gene Families AT4G29350 70.8 6.0e-52 200.3
HCH10g0506 . 1 133 Cytoskeleton Gene Families AT4G29340 84.3 2.4e-64 241.5
HCH10g0505 . 3 132 Cytoskeleton Gene Families AT4G29340 72.9 3.1e-56 214.5
HCH6g0143 . 1 130 Cytoskeleton Gene Families AT4G29340 69.2 8.0e-52 199.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000079 8 8 7 8 6 8 16 8 8 7 8 8 15 7 7 14 8 15 16 8 7 7 6 8 8 8 7 14 15 6 276