Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0469 ATGAGTCATTTTAAGCAACTGTTTGGTGAGTCAAAGCCATATTTGTGCGTCATTTTTTTGCAGTTTGGCTATGCTGGAATGGCCATTATCTCAAAATATGCTCTAAACCAAGGAATGAGCCTACATGTTTTATTAGCTTACCGTAATGCTGTTGCTACTCTTGTTATTGCCCCTTTCGCCATTGTCTTTGACAGAAAAGTGAGAACAAAGATGACCTTCTCAATTTTCATGAAGATTGTGTTGCTGGGTTTGTTGGAGCCAGTAATAGACCAGAACTTGTACTTCACTGGTATGAAGTACACTACAGCAACCTTTGCCACTGCCATGTGCAATATTCTACCTGCTTTTGCATTCCTCATGGCTTTGGCTTGCAGGCTTGAGAAAGTCAATATTTTCAAAATGAGTAGTCAAGCAAAAGTATTAGGGACCATAGTGACAGTAGGAGGGGCTATGGTTATGACCTTTATTACAGGACCTTCTTTGAATCTTCCATGGACTAAAGAGAACCACCACTCCAATTCTTCAAGTCATGCAGCAAATCACCAAGACCCACTTAAGGGATCACTGATGATCACTCTTGGTTGCGTTTGCTGGTCAAGTTTCATCACCCTCCAGGCAATTACACTGAAATCATACCCGGCAGAGCTAACTCTTACAGCCTTAATATGCTTGGTGGGCACAATGGGAGGCACTGTGGTGGCTTTGATAATGGAAAAGGGAAACCCTGCAGCTTGGTCATTGCACTTTGACAGTCAACTCCTAGCAGTAGTTTATGGTGGAATCATATGTTCAGGGGTGAGTTATTATATTCAAGGAGTGGTAATGCAGAAAAAAGGGCCGGTTTTTGTTTCTGCATTCAACCCTCTGGGCATGATTCTAGTTGCAATTATGAGTTCCTTCATTATGTTAGAAATCATGTACTTAGGGAGGGTTATTGGAGCAATTGTCATTATTGGTGGCTTATACCTGGTTTTGTGGGGCAAAAGTAAAGATGAGGTTGTAACTAAATCAATGAATGATAAGATAGCACCCTCTGAGAAACAAATGACTGCAAAGGATGAGATTTCAAAGGCTCAATCAAGTCAAGAATTTATGGTTCTTGATGTTGCTAATAAAGAGGAAACAAACTAA 1131 40.67 MSHFKQLFGESKPYLCVIFLQFGYAGMAIISKYALNQGMSLHVLLAYRNAVATLVIAPFAIVFDRKVRTKMTFSIFMKIVLLGLLEPVIDQNLYFTGMKYTTATFATAMCNILPAFAFLMALACRLEKVNIFKMSSQAKVLGTIVTVGGAMVMTFITGPSLNLPWTKENHHSNSSSHAANHQDPLKGSLMITLGCVCWSSFITLQAITLKSYPAELTLTALICLVGTMGGTVVALIMEKGNPAAWSLHFDSQLLAVVYGGIICSGVSYYIQGVVMQKKGPVFVSAFNPLGMILVAIMSSFIMLEIMYLGRVIGAIVIIGGLYLVLWGKSKDEVVTKSMNDKIAPSEKQMTAKDEISKAQSSQEFMVLDVANKEETN 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 53289190 53293374 + evm.model.ptg000006l.856 HCH1g0469 538488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0469 376 SUPERFAMILY Multidrug resistance efflux transporter EmrE 47 153 - -
HCH1g0469 376 Pfam EamA-like transporter family 186 325 IPR000620 GO:0016020(InterPro)
HCH1g0469 376 Pfam EamA-like transporter family 13 150 IPR000620 GO:0016020(InterPro)
HCH1g0469 376 PANTHER WAT1-RELATED PROTEIN 15 345 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
HCH1g0469 376 SUPERFAMILY Multidrug resistance efflux transporter EmrE 247 329 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0453 HCH-Chr13:3142416 HCH1g0469 HCH-Chr1:53289190 7.70E-129 dispersed
HCH13g0454 HCH-Chr13:3157434 HCH1g0469 HCH-Chr1:53289190 6.60E-112 dispersed
HCH1g0469 HCH-Chr1:53289190 HCH1g0471 HCH-Chr1:53303737 1.10E-180 dispersed
HCH1g0468 HCH-Chr1:53260165 HCH1g0469 HCH-Chr1:53289190 7.60E-52 tandem
HCH1g0469 HCH-Chr1:53289190 HCH1g0470 HCH-Chr1:53296202 1.60E-174 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0469 - - - 0.0