Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0470 ATGAAGCATTTTGAGCAGTCAAAGCCATATCTTGGTGTCATTTTTGTGCAGTTTGGCTACGCTGGAATGGCCATTATCACAAAGTTTGCTCTAAATCAAGGAATGAGCATTCGTGTTTTTTTAGCTTACCGTTATGCTGTTGCTACTCTTGTTACTGCCCCTTTCGCCATTATCTTTGACAGGAAAGTAAGAACAAAGATGACCTTCTCAATTTTCATGAAGATTGTGTTGCTTGGTTTCTTGGAGCCAGTAATGGACCAAAACTTGTACTACACTGGTATGAAGTACACTACAGCAACCTTTGCCACTGCCATGTGCAATATTCTACCTGCTTTTGCATTCCTTATGGCTTGGGCTTGCAGGCTTGAGAAAGTTAATATTTTGAAAAAGGGTAGTCAAGCAAAAGTATTAGGGACCATAGTGACAGTAGGAGGAGCTATGGTTATGACCTTTATTACAGGACCTTCTTTGAATCTTCCATGGACTAAAGAGAATCATCACTCTCATTCTTCAAGTGATGCTGCAAATCATCAAGACCCACTTAAGGGATCACTGATGATCACTGGTTGTTGCATTTGCTGGTCAAGTTTCATTATCCTCCAGGCCATTACACTAAAATCATATCCGGCAGAGCTAACTCTTACAGCCTTAATATGCTTGGTGGGCACAATGGGAGGCACTGGGGTGGCTTTGATAATGGAAAAGGGAAACCCTGCAGCTTGGTCATTGCACTTTGACAGTCAACTCCTAGCAGTAGTTTATGGTGGAATAATATGTTCATGTGTTACTTATTATATTCAAGGAGTGGTAATGCAGACAAAAGGGCCTGTTTTTATTACTGCATTCAATCCTCTGGTCATGATTCTTGTTGCAATTATGAGTTCCTTCATCTTGTCTGAGATCATGTACTTAGGGAGGGTTATTGGAGCAGTTGTCATTATTGCTGGCTTGTACCTGGTTTTGTGGGGAAAAAGCAAAGATCAGCTTGTAATTCAATCAATCAACGATGAGATAGCACATTCCGAGCAACAGATGACTTCAAAGGATGAGGTTTCAAAGGCTCAATCAAGTCAAGAATTTCTGGTTCTTGATGTTGCTAATAAAGAGGGAACAAACTAA 1119 40.48 MKHFEQSKPYLGVIFVQFGYAGMAIITKFALNQGMSIRVFLAYRYAVATLVTAPFAIIFDRKVRTKMTFSIFMKIVLLGFLEPVMDQNLYYTGMKYTTATFATAMCNILPAFAFLMAWACRLEKVNILKKGSQAKVLGTIVTVGGAMVMTFITGPSLNLPWTKENHHSHSSSDAANHQDPLKGSLMITGCCICWSSFIILQAITLKSYPAELTLTALICLVGTMGGTGVALIMEKGNPAAWSLHFDSQLLAVVYGGIICSCVTYYIQGVVMQTKGPVFITAFNPLVMILVAIMSSFILSEIMYLGRVIGAVVIIAGLYLVLWGKSKDQLVIQSINDEIAHSEQQMTSKDEVSKAQSSQEFLVLDVANKEGTN 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 53296202 53298817 + evm.model.ptg000006l.855 HCH1g0470 538489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0470 372 PANTHER WAT1-RELATED PROTEIN 13 343 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
HCH1g0470 372 SUPERFAMILY Multidrug resistance efflux transporter EmrE 43 150 - -
HCH1g0470 372 SUPERFAMILY Multidrug resistance efflux transporter EmrE 244 326 - -
HCH1g0470 372 Pfam EamA-like transporter family 10 149 IPR000620 GO:0016020(InterPro)
HCH1g0470 372 Pfam EamA-like transporter family 182 321 IPR000620 GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0470 HCH-Chr1:53296202 HCH9g0645 HCH-Chr9:4288877 1.40E-109 dispersed
HCH1g0469 HCH-Chr1:53289190 HCH1g0470 HCH-Chr1:53296202 1.60E-174 tandem
HCH1g0470 HCH-Chr1:53296202 HCH1g0471 HCH-Chr1:53303737 2.50E-172 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0470 - - - 0.0