Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0471 ATGAGTCATTTTGAGCAACTGTTTGGTCAATCAAAGCCATATTTGTGTGTCATTTTTGTGCAGTTTGGATATGCTGGAATGGCCATTATCTCAAAATATGCTCTAAACCAAGGAATGAGCCTACATGTTTTTGTAGCTTATCGTCATGCTGTTGCTACTCTTTTTATTGCCCCTTTCGCTATTGTCTTCGACAGGAAAGTAAGAACAAAAATGACCACTTCAATTTTCATGAAGATTGTGGTGCTAGGTTTCTTGGAGCCCGTAATAGACCAAAACTTGTTCTACATTGGAATGAATTACACTACAGCAACCTTTGCAACTGCCATGTGCAATATTTCACCTGCTTTTGCATTCCTCATGGCTTGGGCTTTCAGGCTTGAGAAAGTGAATATTTTCAAAATGAGCAGTCAAGCAAAAGCATTAGGGACCATAGTGACAGTAGGAGGAGCTATGGTTATGACCTTTATTACAGGACCTTCTTTGCATCTTCCATGGACTAAAGAGAATCATCACTCTCATTCTTCAAGTGATGCTGCAAATCACCAAGCCCCACTTAAGGGATCACTGATGATCACTGTTGGTTGCTTTTGCTGGTCAAGTTTCATCACCCTCCAGGCAAATACACTGAAATCATACCCAGCAGAGCTATCTCTTACAGCCTTAATATGCTTGGTGGGCACAATGGGAGGCACTGTGGTGGCTTTGATAATGGAAAAGGGAAACCCTGCAGCTTGGTCATTACACTTTGACAGTCAACTCCTAGCAGTAGTTTATGGTGGAATCATATGTTCAGGGATTACTTATTATATTCAAGGAGTGGTAATGCAGAAAAAAGGGCCTGTTTTTGTTACTGCATTCAACCCTCTGAGCATGATTCTGGTTGCAATTATGAGTTCCTTCATCTTGTTTGAGATCATGTACTTAGGAAGGGTTATTGGAGCAGTAGTCATTATCATTGGCTTGTACCTGGTTTTGTGGGGCAAAAGCAAAGATGAGTTTGTAACTAAATCAATCAATGAAAAGATAGCACCTTATGAGCAACAAATGACTGCAAAGGATGAAATTTCAAAGGCTCAATCAAATCAAGAATTTCTAGTTCTTGATGTCACTAATAAAGGAACAAGTTGTGAACCACCGCATGTAACCTGA 1149 40.03 MSHFEQLFGQSKPYLCVIFVQFGYAGMAIISKYALNQGMSLHVFVAYRHAVATLFIAPFAIVFDRKVRTKMTTSIFMKIVVLGFLEPVIDQNLFYIGMNYTTATFATAMCNISPAFAFLMAWAFRLEKVNIFKMSSQAKALGTIVTVGGAMVMTFITGPSLHLPWTKENHHSHSSSDAANHQAPLKGSLMITVGCFCWSSFITLQANTLKSYPAELSLTALICLVGTMGGTVVALIMEKGNPAAWSLHFDSQLLAVVYGGIICSGITYYIQGVVMQKKGPVFVTAFNPLSMILVAIMSSFILFEIMYLGRVIGAVVIIIGLYLVLWGKSKDEFVTKSINEKIAPYEQQMTAKDEISKAQSNQEFLVLDVTNKGTSCEPPHVT 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 53303737 53308173 + evm.model.ptg000006l.854 HCH1g0471 538490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0471 382 SUPERFAMILY Multidrug resistance efflux transporter EmrE 247 329 - -
HCH1g0471 382 Pfam EamA-like transporter family 186 325 IPR000620 GO:0016020(InterPro)
HCH1g0471 382 Pfam EamA-like transporter family 13 136 IPR000620 GO:0016020(InterPro)
HCH1g0471 382 SUPERFAMILY Multidrug resistance efflux transporter EmrE 47 153 - -
HCH1g0471 382 PANTHER WAT1-RELATED PROTEIN 15 343 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0468 HCH-Chr1:53260165 HCH1g0471 HCH-Chr1:53303737 2.70E-49 dispersed
HCH1g0469 HCH-Chr1:53289190 HCH1g0471 HCH-Chr1:53303737 1.10E-180 dispersed
HCH1g0471 HCH-Chr1:53303737 HCH9g0645 HCH-Chr9:4288877 1.40E-114 dispersed
HCH1g0470 HCH-Chr1:53296202 HCH1g0471 HCH-Chr1:53303737 2.50E-172 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0471 - - - 0.0