Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0472 ATGTCTTTCCAGCATAGATTGTGGACGCATAGGGAGGCTGGATGTTTAACTGATGGAGAAATAAATTATGATAGCTCATCCAGAATTGAAACAAAACGTGGCCATCAGTGGTTTATGGATGGCGATGCACCGGAACTATTTGGCAGTAAGAAACAAGCCATAGAAGCTGCAAACAGTAGACCTGTTCCAGGAGTACCACACATGAATGTTTCTCATTGGGAAAACAATTCAAGTTTCCAGTCAGTTCCTGGGCCTTTCATTGATCGCCTCTTTGGCTCAGAGCCTGTACGAACTGTCAACATGGTTGATAGAGGCATTACTGTAGGAAATGCAAACATGAGCATGGAAAGAAAAGATTTTCAGAATCATTATGCAACCAATCCATCAGTTGGCCTCTCCATGTCCCATTCCATCGAAGATCCCTCGTCATGTCTTAGTTTTGGTGGAATCAGAAAAGTTAAAGTCAATCAAGTCAGGGACCCTGACATTGGTATGTCAGCCTCGCTGGGACATGCTTATAGCAGGGGTGATAATGGTACCATTTCAATGGGTACACCATTTAGCAAAAACCATGAGAACGCCATATCATTGGGCCAAACTTATAATAGTAGAGATGAGAATAACATCTCAATTACCCCTGCATATCATAAAACAGACGACAATTTTATTTCAATAGGTCACTCCTTCAGCAAGGGCGATGGAAATTTTATTACAATTGGTCATAACTATAGCAAGGGAGACAATAGCATCTTATCAATGAAGGGGGATGACAATTTTATATCAATGGGTCAGTCTTTTGAGAAGACTGAAGGCAATATCATTTCTTTGGGTCCCTCCTACAATAAGGGGCACGAAAGTTTTATCTCAATGGGACCAACCTACAGTAAAGCAAATGACACTTTCATTTCAATGACTTCCTCCTATAACAAGGGAAATGATGATACCTTATCAATGGGTCCAACCTATGACAAGGTGGATTCTGATATTGTATCTTTGGGTCCTAAATATGACAAAGTGGATTCTGGGGCTCAGTCTATGGTTCACAACTATCACAAGGGTGAGAGCAATACCATATCTTTTGTAGGTTTTGATGATGAAACCGAGACAGGTAATCCTACTGGTGGGATCATTAGTAGTTATGACTTGTTGATGGCTAACCAGACTTCTGCACAAGCATCAGAAGTATCAACCCTGAAAGATTCAGTTGATTCCAATGTTGAAGTTAATGTTAACACTGCTGCAAAAGTAAATGCTAAAACTTACACCAGTGCCAAGAATAAAGAGCCAAGGACAACTAAGAAGGTGCCTCCAAATAGCTTCCCTTCAAATGTTAAAAGTTTGCTCTCAACTGGTATGCTTGACGGGGTCCCTGTGAAGTATGTTTCTTGGTCACGGGAGAAAAACCTCAAGGGAATCATAAAAGGAACTGGATATTTGTGCAGCTGTGACAACTGCCAGCACTCTAAGGCTCTCAATGCTTATGAATTTGAGAGGCATGCTGGCTGCAAAACCAAACATCCAAACAATCACATTTATTTTGAGAATGGTAAGACTATCTATGCGGTTGTTCAAGAGCTAAAGAACACTCCTCAGGAGATGCTATTTGATGTGATTCAGAATGTGACTGGCTCTCCCATTAATCAGAAGAATTTTCGCATTTGGAAAGCATCTTATCAAGCTGCCACCCGTGAACTTCAACGTATTTATGGGAAGGATGAAGTAATCATGCCTTCTTGA 1737 40.88 MSFQHRLWTHREAGCLTDGEINYDSSSRIETKRGHQWFMDGDAPELFGSKKQAIEAANSRPVPGVPHMNVSHWENNSSFQSVPGPFIDRLFGSEPVRTVNMVDRGITVGNANMSMERKDFQNHYATNPSVGLSMSHSIEDPSSCLSFGGIRKVKVNQVRDPDIGMSASLGHAYSRGDNGTISMGTPFSKNHENAISLGQTYNSRDENNISITPAYHKTDDNFISIGHSFSKGDGNFITIGHNYSKGDNSILSMKGDDNFISMGQSFEKTEGNIISLGPSYNKGHESFISMGPTYSKANDTFISMTSSYNKGNDDTLSMGPTYDKVDSDIVSLGPKYDKVDSGAQSMVHNYHKGESNTISFVGFDDETETGNPTGGIISSYDLLMANQTSAQASEVSTLKDSVDSNVEVNVNTAAKVNAKTYTSAKNKEPRTTKKVPPNSFPSNVKSLLSTGMLDGVPVKYVSWSREKNLKGIIKGTGYLCSCDNCQHSKALNAYEFERHAGCKTKHPNNHIYFENGKTIYAVVQELKNTPQEMLFDVIQNVTGSPINQKNFRIWKASYQAATRELQRIYGKDEVIMPS 578
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 53309673 53316210 - evm.model.ptg000006l.853 HCH1g0472 538491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0472 578 Pfam Tify domain binding domain 471 526 IPR032308 -
HCH1g0472 578 PANTHER AUTOIMMUNE REGULATOR 13 560 - GO:0000977(PANTHER)|GO:0003682(PANTHER)|GO:0005634(PANTHER)|GO:0042393(PANTHER)|GO:0045944(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0472 HCH-Chr1:53309673 HCH11g0209 HCH-Chr11:1972436 2.40E-36 wgd
HCH1g0472 HCH-Chr1:53309673 HCH2g1111 HCH-Chr2:53883887 1.50E-86 wgd
HCH1g0472 HCH-Chr1:53309673 HCH9g0644 HCH-Chr9:4280497 1.40E-84 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0472 - - - 0.0