Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0472 ATGTCTTTCCAGCATAGATTGTGGACGCATAGGGAGGCTGGATGTTTAACTGATGGAGAAATAAATTATGATAGCTCATCCAGAATTGAAACAAAACGTGGCCATCAGTGGTTTATGGATGGCGATGCACCGGAACTATTTGGCAGTAAGAAACAAGCCATAGAAGCTGCAAACAGTAGACCTGTTCCAGGAGTACCACACATGAATGTTTCTCATTGGGAAAACAATTCAAGTTTCCAGTCAGTTCCTGGGCCTTTCATTGATCGCCTCTTTGGCTCAGAGCCTGTACGAACTGTCAACATGGTTGATAGAGGCATTACTGTAGGAAATGCAAACATGAGCATGGAAAGAAAAGATTTTCAGAATCATTATGCAACCAATCCATCAGTTGGCCTCTCCATGTCCCATTCCATCGAAGATCCCTCGTCATGTCTTAGTTTTGGTGGAATCAGAAAAGTTAAAGTCAATCAAGTCAGGGACCCTGACATTGGTATGTCAGCCTCGCTGGGACATGCTTATAGCAGGGGTGATAATGGTACCATTTCAATGGGTACACCATTTAGCAAAAACCATGAGAACGCCATATCATTGGGCCAAACTTATAATAGTAGAGATGAGAATAACATCTCAATTACCCCTGCATATCATAAAACAGACGACAATTTTATTTCAATAGGTCACTCCTTCAGCAAGGGCGATGGAAATTTTATTACAATTGGTCATAACTATAGCAAGGGAGACAATAGCATCTTATCAATGAAGGGGGATGACAATTTTATATCAATGGGTCAGTCTTTTGAGAAGACTGAAGGCAATATCATTTCTTTGGGTCCCTCCTACAATAAGGGGCACGAAAGTTTTATCTCAATGGGACCAACCTACAGTAAAGCAAATGACACTTTCATTTCAATGACTTCCTCCTATAACAAGGGAAATGATGATACCTTATCAATGGGTCCAACCTATGACAAGGTGGATTCTGATATTGTATCTTTGGGTCCTAAATATGACAAAGTGGATTCTGGGGCTCAGTCTATGGTTCACAACTATCACAAGGGTGAGAGCAATACCATATCTTTTGTAGGTTTTGATGATGAAACCGAGACAGGTAATCCTACTGGTGGGATCATTAGTAGTTATGACTTGTTGATGGCTAACCAGACTTCTGCACAAGCATCAGAAGTATCAACCCTGAAAGATTCAGTTGATTCCAATGTTGAAGTTAATGTTAACACTGCTGCAAAAGTAAATGCTAAAACTTACACCAGTGCCAAGAATAAAGAGCCAAGGACAACTAAGAAGGTGCCTCCAAATAGCTTCCCTTCAAATGTTAAAAGTTTGCTCTCAACTGGTATGCTTGACGGGGTCCCTGTGAAGTATGTTTCTTGGTCACGGGAGAAAAACCTCAAGGGAATCATAAAAGGAACTGGATATTTGTGCAGCTGTGACAACTGCCAGCACTCTAAGGCTCTCAATGCTTATGAATTTGAGAGGCATGCTGGCTGCAAAACCAAACATCCAAACAATCACATTTATTTTGAGAATGGTAAGACTATCTATGCGGTTGTTCAAGAGCTAAAGAACACTCCTCAGGAGATGCTATTTGATGTGATTCAGAATGTGACTGGCTCTCCCATTAATCAGAAGAATTTTCGCATTTGGAAAGCATCTTATCAAGCTGCCACCCGTGAACTTCAACGTATTTATGGGAAGGATGAAGTAATCATGCCTTCTTGA 1737 40.88 MSFQHRLWTHREAGCLTDGEINYDSSSRIETKRGHQWFMDGDAPELFGSKKQAIEAANSRPVPGVPHMNVSHWENNSSFQSVPGPFIDRLFGSEPVRTVNMVDRGITVGNANMSMERKDFQNHYATNPSVGLSMSHSIEDPSSCLSFGGIRKVKVNQVRDPDIGMSASLGHAYSRGDNGTISMGTPFSKNHENAISLGQTYNSRDENNISITPAYHKTDDNFISIGHSFSKGDGNFITIGHNYSKGDNSILSMKGDDNFISMGQSFEKTEGNIISLGPSYNKGHESFISMGPTYSKANDTFISMTSSYNKGNDDTLSMGPTYDKVDSDIVSLGPKYDKVDSGAQSMVHNYHKGESNTISFVGFDDETETGNPTGGIISSYDLLMANQTSAQASEVSTLKDSVDSNVEVNVNTAAKVNAKTYTSAKNKEPRTTKKVPPNSFPSNVKSLLSTGMLDGVPVKYVSWSREKNLKGIIKGTGYLCSCDNCQHSKALNAYEFERHAGCKTKHPNNHIYFENGKTIYAVVQELKNTPQEMLFDVIQNVTGSPINQKNFRIWKASYQAATRELQRIYGKDEVIMPS 578
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 53309673 53316210 - evm.model.ptg000006l.853 HCH1g0472 538491

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0472 578 Pfam Tify domain binding domain 471 526 IPR032308 -
HCH1g0472 578 PANTHER AUTOIMMUNE REGULATOR 13 560 - GO:0000977(PANTHER)|GO:0003682(PANTHER)|GO:0005634(PANTHER)|GO:0042393(PANTHER)|GO:0045944(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0472 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0472 HCH-Chr1:53309673 HCH11g0209 HCH-Chr11:1972436 2.40E-36 wgd
HCH1g0472 HCH-Chr1:53309673 HCH2g1111 HCH-Chr2:53883887 1.50E-86 wgd
HCH1g0472 HCH-Chr1:53309673 HCH9g0644 HCH-Chr9:4280497 1.40E-84 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH11g0209 . 21 830 PHD Transcription Factor Family AT3G53680 53.5 8.6e-245 843.6
HCH9g0644 . 381 509 PHD Transcription Factor Family AT3G53680 53.5 2.8e-38 157.5
HCH2g1111 . 319 445 PHD Transcription Factor Family AT3G53680 54.7 1.4e-37 155.2
HCH1g0472 . 433 559 PHD Transcription Factor Family AT3G53680 55.9 1.8e-37 154.8
HCH1g0081 . 13 409 PHD Transcription Factor Family AT5G22260 60.7 6.4e-134 474.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003985 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 8 1 0 44