Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH1g0486 | ATGGTGGGCACTGAGGATGATTCTGGTAATTCTGGGGCCCCATTGCAGCTTTCTGGCAGCGGCAGCGGCAGCAGGAAATTGTTCTGGCGCTCGGCATCATGGTCTGCATCTCGTTCCTCTCTACACCATCCCGATGTTGTGAATAAAGGTGGAGAACCTGATAGTAATGGGCCGAATCGGAACATTCCTGCCCCACTAACCCCGAGATCGCAGCAGCATTGCAAAGCGCGGTCATGTTTGCCTCCTTTACAGCCTTTGTCGATAGCTCGTCGAAGCTTAGATGAGTGGCCGAAAGCGGGGTCTGATGATATAGGCGAGTGGCCGCAACCTCCTACTCCGAGTGGTAGAGGAAATGGGGAGAGGTTGAAACTTGATTTGTCGACAATTCAGAGAAACCCAGATAAGAATAGTGGGCTTGTGAAGAGGGATAAGATTGCTTTCTTTGACAAAGAGTGTTCGAAAGTGGCGGAACATGTGTATCTTGGTGGAGATGCAGTTGCTCGAGATAGGGATATACTTAAACAAAATGGAATATCTCATGTGTTGAATTGTGTAGGATTTGTTTGTCCCGAGTACTTCAAAGATGATTTCATGTACAGAACATTATGGTTGCAGGATAGCCCATCTGAGGATATTACTAGTATTCTTTATGATGTTTTTGACTACTTTGAAGATGTTAGAGAACAAGGTGGAAGAGTTTTTGTTCATTGTTGCCAGGGAGTGTCTCGATCCACATCCTTGGTGATTGCCTATCTAATGTGGAGAGAAGGGCAGAGTTTTGATGATGCATTTCAATATGTGAAGGCGGCGAGAGGTATTGCTGATCCAAATATGGGTTTTGCTTGCCAATTATTACAGTGCCAAAAGAGGGTTCATGCTTTCCCTCTTAGCCCAAGTTCACTGTTGAGGATGTATAGAATTGCTCCACACTCACCGTATGATCCTTTGCACCTAGTCCCCAAAATGTTGAACGATCCTTCACCTTCTGCATTGGATTCTAGAGGTTCGTTTATCATTCATATACCTTCTGCCATATATGTTTGGATCGGTAAGAATTGTGAGGCAATTATGGAAAGGGATGCTAAGGGAGCTGTTCTTCAGATTGTTCGATATGAGAGAGTGCAAGGGCCCATATCTGTAATTAAGGAAGGAGAAGAACCAGCTAGCTTTTGGGATTCTTTTGCAAACTTGTTACCTTTAATGGATAAATCTAGCAATAAAACTAATTTGGGGGAGTTAAAAGTTAAGCCTTATCCTGGGGAGAGGAAAATCGATTCCTATAACATGGATTTTGAGATTTTTAAGAAAGCTATCACAGGTGGTTTTGTTCCTCCATTGCCTTCTTCCGAGATTGAACATGAAACCCGTCTTCCTGTTAGAGAAAGCAGTTGGAGTGTGCTTAGACGTAAGTTTGCCTCTGGAAATATGAAGGAGTTTGTATCAGCTCCCAAAATATCGCTCTCCAGGGCCTATTCAGACTCGTTGATGATGGTGCATTTATCTTCAAAATCTTCATCTCCTTCGTCATTTTCTCCGTTTTCATCTTCTTCACCTACCTATCTCTCTCCAGATTCCCTTTCTTCTGATTCAAGTTCAAGTTCCAAGTATTTTTCAGAATCCTCTCTAGATTCTCCATGTGCTGCTTCACCTTCAGTTCCAGTGCCCTCATCTCTCTCTAGCTTTACAAATATGTCTCTTCTGTCATCCAATAGTTCATCACATTCCATGTCGAATGTTCCAGAAACTTGTGATTCTATCACTTTGGAATCAAGTTCTCATTCATTCTCATTCCAACCTAAAAAGTTCTCACCTTCCCTTGCAGAGCGCCGAGGTAGCATATCAAAATCTTTGACATTGCCCACGATGCCTAGTAAAACGAGGGTGGCAAATAGTGCCTCAAGGTTTCTTTCCAGTCAAGAAGATGGTGAAAGAAGAAAAAAGGTTACTTGCTCTCTTGATCTACCAGTTAATATGAGAAATCCCTCAGAGCTTTTAGATAGGATTGAAAACGAACAGATAGATTCCACTCAAAATTCAAAGAATATAGAAAATGGAATTGATACCAGAGTAGGTGGTGTAGCCTCATGCCAACAGGAAACTACATTTGCTGGACTTTGTGGCAATTCATGTAAAAGCAATCCCAGACTTTTTGAAGAAGGCCTGGTGTCCACTGCAATTAATGAGAAGCAAAGTGATCAAGATTTTCAACCTCTGGTATACTGTTGGCCGGAGTTAGAAAAAATTGCGGCTTTTGATGCAAGTTACCTTAATTCTAAAGCTGCCCTAGTGATTTTCTCTCCAAGTAGGTATTTAGGCAAGAAGGATGACATGAAGTTGTATATTTGGGTAGGAAGTGGTTTTGAGCACGGTTTATCTCAGGTTCGGGTAAAGAGTGACAAAGACTTCAATGATTTAGAAAAAATAGATTGGATTAAAGTTGGTCAGTATGTGCTCACTGAAATTGGTCTTCCAGAGGATACAGAAATTGAGATTGTTAAAGAGGGTGAAGAAACTGAGGAATTTCTTGCACGATCGAATCTTTTGTAG | 2547 | 41.97 | MVGTEDDSGNSGAPLQLSGSGSGSRKLFWRSASWSASRSSLHHPDVVNKGGEPDSNGPNRNIPAPLTPRSQQHCKARSCLPPLQPLSIARRSLDEWPKAGSDDIGEWPQPPTPSGRGNGERLKLDLSTIQRNPDKNSGLVKRDKIAFFDKECSKVAEHVYLGGDAVARDRDILKQNGISHVLNCVGFVCPEYFKDDFMYRTLWLQDSPSEDITSILYDVFDYFEDVREQGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFDDAFQYVKAARGIADPNMGFACQLLQCQKRVHAFPLSPSSLLRMYRIAPHSPYDPLHLVPKMLNDPSPSALDSRGSFIIHIPSAIYVWIGKNCEAIMERDAKGAVLQIVRYERVQGPISVIKEGEEPASFWDSFANLLPLMDKSSNKTNLGELKVKPYPGERKIDSYNMDFEIFKKAITGGFVPPLPSSEIEHETRLPVRESSWSVLRRKFASGNMKEFVSAPKISLSRAYSDSLMMVHLSSKSSSPSSFSPFSSSSPTYLSPDSLSSDSSSSSKYFSESSLDSPCAASPSVPVPSSLSSFTNMSLLSSNSSSHSMSNVPETCDSITLESSSHSFSFQPKKFSPSLAERRGSISKSLTLPTMPSKTRVANSASRFLSSQEDGERRKKVTCSLDLPVNMRNPSELLDRIENEQIDSTQNSKNIENGIDTRVGGVASCQQETTFAGLCGNSCKSNPRLFEEGLVSTAINEKQSDQDFQPLVYCWPELEKIAAFDASYLNSKAALVIFSPSRYLGKKDDMKLYIWVGSGFEHGLSQVRVKSDKDFNDLEKIDWIKVGQYVLTEIGLPEDTEIEIVKEGEETEEFLARSNLL | 848 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 53660245 | 53663374 | - | evm.model.ptg000006l.839 | HCH1g0486 | 538505 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH1g0486 | 848 | Pfam | Dual specificity phosphatase, catalytic domain | 159 | 289 | IPR000340 | GO:0016311(InterPro) | |
| HCH1g0486 | 848 | CDD | DSP | 152 | 286 | - | - | |
| HCH1g0486 | 848 | MobiDBLite | consensus disorder prediction | 60 | 74 | - | - | |
| HCH1g0486 | 848 | ProSitePatterns | Tyrosine specific protein phosphatases active site. | 235 | 245 | IPR016130 | GO:0016311(InterPro) | |
| HCH1g0486 | 848 | ProSiteProfiles | Tyrosine specific protein phosphatases domain profile. | 210 | 271 | IPR000387 | GO:0016311(InterPro) | |
| HCH1g0486 | 848 | Gene3D | Protein tyrosine phosphatase superfamily | 131 | 293 | IPR029021 | - | |
| HCH1g0486 | 848 | SUPERFAMILY | (Phosphotyrosine protein) phosphatases II | 146 | 292 | IPR029021 | - | |
| HCH1g0486 | 848 | SMART | VILL_6 | 303 | 397 | IPR007122 | GO:0051015(InterPro) | |
| HCH1g0486 | 848 | MobiDBLite | consensus disorder prediction | 1 | 79 | - | - | |
| HCH1g0486 | 848 | ProSiteProfiles | Dual specificity protein phosphatase domain profile. | 151 | 293 | IPR020422 | GO:0006470(InterPro) | |
| HCH1g0486 | 848 | MobiDBLite | consensus disorder prediction | 617 | 641 | - | - | |
| HCH1g0486 | 848 | SUPERFAMILY | Actin depolymerizing proteins | 298 | 400 | - | - | |
| HCH1g0486 | 848 | PANTHER | MKPA PROTEIN | 17 | 843 | - | - | |
| HCH1g0486 | 848 | SMART | dsp_5 | 151 | 290 | IPR020422 | GO:0006470(InterPro) | |
| HCH1g0486 | 848 | Gene3D | Severin | 302 | 397 | IPR029006 | - | |
| HCH1g0486 | 848 | Gene3D | Severin | 713 | 844 | IPR029006 | - | |
| HCH1g0486 | 848 | MobiDBLite | consensus disorder prediction | 9 | 42 | - | - | |
| HCH1g0486 | 848 | MobiDBLite | consensus disorder prediction | 97 | 120 | - | - | |
| HCH1g0486 | 848 | MobiDBLite | consensus disorder prediction | 617 | 637 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH1g0486 | HCH-Chr1:53660245 | HCH1g1090 | HCH-Chr1:58599636 | 4.10E-162 | dispersed |
Pathway information