Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0490 ATGACGCTTGAGGTTGCGGTCAAGGCTGCTTCTGGTGCCCCTCATATTCTTGGAGACTGTCCTTTTGCTCAAAGGGTCCTTTTAACTTTGGAGGAGAAGAAGGTTCCTTATGAACAAATTCTTATCGATCTATCCGACAAGCCCAAATGGTTTTTGGAAGTGAATCCAGAAGGGAAGGTGCCTGTTTTGAAGATTGATGGAAAATGGGTTGCTGATTCTGATGTCATTGTTGGGATTCTTGAGGAAAAGTTCCCTGAGCCTTCGCTTGTTACCCCTCCTGAATTTTCTTCAGTGGGATCAAAACTATTTGGTGCCTTTGTAAAATTCTTATTCAGCAAGGATCCAACTGATGGTTCAGAGCAGGTTTTGCTTGATGAGTTGAAGGCATTGGATGAGCATCTCAAGGATCATGGTCCTTATGTTGCTGGAGAGAAGATAACTGCTGTTGATTTGAGTTTGGCACCAAAACTGTACCATCTCGATATTACTCTCGGTCATTTCAAGAAGTGGGCTATCCCCGAAAACTTAACCCACGTCAACAACTACAAAAAGTTGCTTTTCTCTCGAGAATCTTTTGAGAAGACAACGGCTGCCAAGGAACATGTAATTGCAGGATGGGCCCCCAAGGTCAATGCATGA 639 43.66 MTLEVAVKAASGAPHILGDCPFAQRVLLTLEEKKVPYEQILIDLSDKPKWFLEVNPEGKVPVLKIDGKWVADSDVIVGILEEKFPEPSLVTPPEFSSVGSKLFGAFVKFLFSKDPTDGSEQVLLDELKALDEHLKDHGPYVAGEKITAVDLSLAPKLYHLDITLGHFKKWAIPENLTHVNNYKKLLFSRESFEKTTAAKEHVIAGWAPKVNA 212
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 53707843 53710063 - evm.model.ptg000006l.835 HCH1g0490 538509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0490 212 Pfam Glutathione S-transferase, C-terminal domain 120 182 - -
HCH1g0490 212 FunFam Glutathione S-transferase DHAR3 chloroplastic 1 89 - -
HCH1g0490 212 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 66 212 IPR010987 -
HCH1g0490 212 PANTHER GLUTATHIONE S-TRANSFERASE DHAR2-RELATED 3 209 IPR044627 GO:0010731(PANTHER)|GO:0033355(InterPro)|GO:0045174(PANTHER)|GO:0045174(InterPro)|GO:0098869(InterPro)
HCH1g0490 212 CDD GST_N_family 15 77 - -
HCH1g0490 212 SFLD Glutathione Transferase (cytosolic) 19 182 IPR040079 -
HCH1g0490 212 SUPERFAMILY GST C-terminal domain-like 98 210 IPR036282 -
HCH1g0490 212 Gene3D Glutaredoxin 1 89 - -
HCH1g0490 212 Gene3D - 90 212 - -
HCH1g0490 212 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 10 88 IPR004045 -
HCH1g0490 212 SUPERFAMILY Thioredoxin-like 18 87 IPR036249 -
HCH1g0490 212 CDD GST_C_DHAR 89 209 - -
HCH1g0490 212 Pfam Glutathione S-transferase, N-terminal domain 20 82 IPR004045 -
HCH1g0490 212 SFLD Main (cytGST) 19 182 - -
HCH1g0490 212 FunFam Glutathione S-transferase DHAR3, chloroplastic 90 212 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0490 HCH-Chr1:53707843 HCH9g0425 HCH-Chr9:2673207 4.40E-73 dispersed
HCH1g0490 HCH-Chr1:53707843 HCH1g0491 HCH-Chr1:53721209 2.60E-105 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0490 K21888 - rcu:8260843 351.288