Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0497 ATGATGGTATCAGAGACTCCAAAGAGTGGTAGTACATTTATGCAGATTAAAGAATTCTTGGGCTTCTCCCATACTTCCTCCAAAACTCTTCATTCTTCTTCTAGTTTCCTGAGTTCTAGGAGTCCAAGACCATCATCCTATGATGTTTCTGAAGCCATGATGGAGGAAAACATCATAAATGCAGAACCAATTATCTTAAAATGGGATATAGAATCCTCAGAGTACTACAAAATCACCTTCATCTTCCACCATGACAGAAACGAAGCCGAAGAGTTTCTCAAGTCCGTAAAGAACTTGCGGCAAGCCATGGACTTTTTAGTCGCGGAGAACTCGATGTCTAGCAAGCTTGTTCTTGCACAAAAGTTGATGCAAGTTGCCATGAAAAGGCTTGAGAAAGAGTTCTATCAGATTTTGACTCAAAACCGAGATCACCTTGATCCAGAATCCGTTTCTAGTCGGTCGAGTAATTCTCGTAATGAGGAGGATGTGGAGGTTCGAACCGAGAATGAGTTGGAAATTGCTGGCAATTCTATCACAGAGGTGGATAGTGTCACAGCAGTTGCCATGAGTGATCTAAGATCAATAGCTGATTGTATGATTGGCTCTGGCTATGGAAAAGAGTGTGTGAAAATATATAAAGTTATCAGAAAATCGATTGTAGACGAAACATTATATCGTCTTGGAACGGAACGGTTCAAATCTTCTCGCATTCAAAGAATGAATGGGGAGACGCTTGAACATGTGATCAGGAACTGGATGAATGCTATAAAGGTTGCTGTGAATTCTCTGTTTCGTGGAGAAAGAATTCTTTGTGATCATGTATTTGCAAGATCAGCCAACATCAGAGAGTCATGCTTTTCAGAGATAACCAAGGAAGGAGCAAGCATTCTCTTCAGATTCCCAGAGCTGATTGCCAAAGGAAAGAAGGAACGTGAAAAGATTTTCTTGCTGATAGAACTCTATGAGGTGAATTCCGATATTTGGCCCGACATCGAATCGATATTCGACTCCGGATCAACCTCCACAATTAAACTACAAGCTCACACATCACTACTCAAACTCGGAGACTTGATTCGCTCCATTCTTTCCGACTGCGAATCAACCATTCAGAAAGATTCCTCAAAGACTCCAGTTTTAGGGGGCGGGATTCACCCTCTAACCCGATCAGTTATGAATTACATATCCTCACTTGGCGATTACGCAGGAATTCTATCCGACATCATACCAAGTAATCCACATATCCCGAATTCCGATATCGAAACTCTGGCTATGGATGGTTCTATGACATCACCAGTGTCTACACAACTGGCATGGCTTATATTAGTACTTTTGTGCAAGCTTGATAGCAAAGCCGAGTTGTACAAAGATGCGTCGTTGTCGTATCTTTTCCTGGCCAACAATCTTCACTTCATTGTGAAAGTGGTGTGCACCACCAGCCTTAAAAGCCTTCTTGGGGATGATTGGATATCCAACCACATGAATAAGGTTAAACTATATGCTTCAAACTATGAATCCATGGCTTGGTATAAGGTGTTCTCATCTTTACCAGAGAAGAATTTGCAAGAAACTTCACCTCAAATTGCCAAAGACAGCTTTATGAGGTTCAATGAGGCTTTCGAAGCAGCCTACCGGAAACAGATGTCGTGGACTGTCGATGACGGAAAGTTGAGAGACGAGTTAAAGGTGTCAATAGCAAACAAGTTACTGCCAAGGTATCAAGAGTTTTACATTGAATACATTGAGATGCTGAGTGGAGAAAACAACTTGGAGCTGTTTGTGAGGTTTTCTCCTGATGATTTAGGGAACTACTTATCGGATTTGTTCCACGGAATCTCTTCCTCGGGTAGTTCTGGATCATCATCTTCATCTCATTCTTCTCAAGGATGTGTACCAACCCTATCTCATTGA 1908 41.61 MMVSETPKSGSTFMQIKEFLGFSHTSSKTLHSSSSFLSSRSPRPSSYDVSEAMMEENIINAEPIILKWDIESSEYYKITFIFHHDRNEAEEFLKSVKNLRQAMDFLVAENSMSSKLVLAQKLMQVAMKRLEKEFYQILTQNRDHLDPESVSSRSSNSRNEEDVEVRTENELEIAGNSITEVDSVTAVAMSDLRSIADCMIGSGYGKECVKIYKVIRKSIVDETLYRLGTERFKSSRIQRMNGETLEHVIRNWMNAIKVAVNSLFRGERILCDHVFARSANIRESCFSEITKEGASILFRFPELIAKGKKEREKIFLLIELYEVNSDIWPDIESIFDSGSTSTIKLQAHTSLLKLGDLIRSILSDCESTIQKDSSKTPVLGGGIHPLTRSVMNYISSLGDYAGILSDIIPSNPHIPNSDIETLAMDGSMTSPVSTQLAWLILVLLCKLDSKAELYKDASLSYLFLANNLHFIVKVVCTTSLKSLLGDDWISNHMNKVKLYASNYESMAWYKVFSSLPEKNLQETSPQIAKDSFMRFNEAFEAAYRKQMSWTVDDGKLRDELKVSIANKLLPRYQEFYIEYIEMLSGENNLELFVRFSPDDLGNYLSDLFHGISSSGSSGSSSSSHSSQGCVPTLSH 635
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 53786940 53788847 + evm.model.ptg000006l.828 HCH1g0497 538516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0497 635 Gene3D Exocyst complex component Exo70 64 616 - -
HCH1g0497 635 SUPERFAMILY Cullin repeat-like 78 609 IPR016159 -
HCH1g0497 635 MobiDBLite consensus disorder prediction 614 635 - -
HCH1g0497 635 Coils Coil 89 109 - -
HCH1g0497 635 MobiDBLite consensus disorder prediction 145 169 - -
HCH1g0497 635 MobiDBLite consensus disorder prediction 155 169 - -
HCH1g0497 635 Pfam Exocyst complex component Exo70 N-terminal 60 140 - -
HCH1g0497 635 Pfam Exo70 exocyst complex subunit C-terminal 250 606 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
HCH1g0497 635 FunFam Exocyst subunit Exo70 family protein 76 616 - -
HCH1g0497 635 PANTHER EXOCYST COMPLEX PROTEIN EXO70 39 610 IPR004140 GO:0000145(PANTHER)|GO:0000145(InterPro)|GO:0006887(InterPro)|GO:0006887(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0497 HCH-Chr1:53786940 HCH6g0062 HCH-Chr6:687870 4.70E-86 dispersed
HCH1g0497 HCH-Chr1:53786940 HCH11g0224 HCH-Chr11:2061486 3.60E-155 wgd
HCH1g0497 HCH-Chr1:53786940 HCH2g1121 HCH-Chr2:53938680 1.70E-160 wgd
HCH1g0497 HCH-Chr1:53786940 HCH3g1304 HCH-Chr3:49769931 1.90E-148 wgd
HCH1g0497 HCH-Chr1:53786940 HCH9g0632 HCH-Chr9:4206381 2.10E-102 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0497 K07195 - csv:101221801 729.554