Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH1g0497 | ATGATGGTATCAGAGACTCCAAAGAGTGGTAGTACATTTATGCAGATTAAAGAATTCTTGGGCTTCTCCCATACTTCCTCCAAAACTCTTCATTCTTCTTCTAGTTTCCTGAGTTCTAGGAGTCCAAGACCATCATCCTATGATGTTTCTGAAGCCATGATGGAGGAAAACATCATAAATGCAGAACCAATTATCTTAAAATGGGATATAGAATCCTCAGAGTACTACAAAATCACCTTCATCTTCCACCATGACAGAAACGAAGCCGAAGAGTTTCTCAAGTCCGTAAAGAACTTGCGGCAAGCCATGGACTTTTTAGTCGCGGAGAACTCGATGTCTAGCAAGCTTGTTCTTGCACAAAAGTTGATGCAAGTTGCCATGAAAAGGCTTGAGAAAGAGTTCTATCAGATTTTGACTCAAAACCGAGATCACCTTGATCCAGAATCCGTTTCTAGTCGGTCGAGTAATTCTCGTAATGAGGAGGATGTGGAGGTTCGAACCGAGAATGAGTTGGAAATTGCTGGCAATTCTATCACAGAGGTGGATAGTGTCACAGCAGTTGCCATGAGTGATCTAAGATCAATAGCTGATTGTATGATTGGCTCTGGCTATGGAAAAGAGTGTGTGAAAATATATAAAGTTATCAGAAAATCGATTGTAGACGAAACATTATATCGTCTTGGAACGGAACGGTTCAAATCTTCTCGCATTCAAAGAATGAATGGGGAGACGCTTGAACATGTGATCAGGAACTGGATGAATGCTATAAAGGTTGCTGTGAATTCTCTGTTTCGTGGAGAAAGAATTCTTTGTGATCATGTATTTGCAAGATCAGCCAACATCAGAGAGTCATGCTTTTCAGAGATAACCAAGGAAGGAGCAAGCATTCTCTTCAGATTCCCAGAGCTGATTGCCAAAGGAAAGAAGGAACGTGAAAAGATTTTCTTGCTGATAGAACTCTATGAGGTGAATTCCGATATTTGGCCCGACATCGAATCGATATTCGACTCCGGATCAACCTCCACAATTAAACTACAAGCTCACACATCACTACTCAAACTCGGAGACTTGATTCGCTCCATTCTTTCCGACTGCGAATCAACCATTCAGAAAGATTCCTCAAAGACTCCAGTTTTAGGGGGCGGGATTCACCCTCTAACCCGATCAGTTATGAATTACATATCCTCACTTGGCGATTACGCAGGAATTCTATCCGACATCATACCAAGTAATCCACATATCCCGAATTCCGATATCGAAACTCTGGCTATGGATGGTTCTATGACATCACCAGTGTCTACACAACTGGCATGGCTTATATTAGTACTTTTGTGCAAGCTTGATAGCAAAGCCGAGTTGTACAAAGATGCGTCGTTGTCGTATCTTTTCCTGGCCAACAATCTTCACTTCATTGTGAAAGTGGTGTGCACCACCAGCCTTAAAAGCCTTCTTGGGGATGATTGGATATCCAACCACATGAATAAGGTTAAACTATATGCTTCAAACTATGAATCCATGGCTTGGTATAAGGTGTTCTCATCTTTACCAGAGAAGAATTTGCAAGAAACTTCACCTCAAATTGCCAAAGACAGCTTTATGAGGTTCAATGAGGCTTTCGAAGCAGCCTACCGGAAACAGATGTCGTGGACTGTCGATGACGGAAAGTTGAGAGACGAGTTAAAGGTGTCAATAGCAAACAAGTTACTGCCAAGGTATCAAGAGTTTTACATTGAATACATTGAGATGCTGAGTGGAGAAAACAACTTGGAGCTGTTTGTGAGGTTTTCTCCTGATGATTTAGGGAACTACTTATCGGATTTGTTCCACGGAATCTCTTCCTCGGGTAGTTCTGGATCATCATCTTCATCTCATTCTTCTCAAGGATGTGTACCAACCCTATCTCATTGA | 1908 | 41.61 | MMVSETPKSGSTFMQIKEFLGFSHTSSKTLHSSSSFLSSRSPRPSSYDVSEAMMEENIINAEPIILKWDIESSEYYKITFIFHHDRNEAEEFLKSVKNLRQAMDFLVAENSMSSKLVLAQKLMQVAMKRLEKEFYQILTQNRDHLDPESVSSRSSNSRNEEDVEVRTENELEIAGNSITEVDSVTAVAMSDLRSIADCMIGSGYGKECVKIYKVIRKSIVDETLYRLGTERFKSSRIQRMNGETLEHVIRNWMNAIKVAVNSLFRGERILCDHVFARSANIRESCFSEITKEGASILFRFPELIAKGKKEREKIFLLIELYEVNSDIWPDIESIFDSGSTSTIKLQAHTSLLKLGDLIRSILSDCESTIQKDSSKTPVLGGGIHPLTRSVMNYISSLGDYAGILSDIIPSNPHIPNSDIETLAMDGSMTSPVSTQLAWLILVLLCKLDSKAELYKDASLSYLFLANNLHFIVKVVCTTSLKSLLGDDWISNHMNKVKLYASNYESMAWYKVFSSLPEKNLQETSPQIAKDSFMRFNEAFEAAYRKQMSWTVDDGKLRDELKVSIANKLLPRYQEFYIEYIEMLSGENNLELFVRFSPDDLGNYLSDLFHGISSSGSSGSSSSSHSSQGCVPTLSH | 635 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 53786940 | 53788847 | + | evm.model.ptg000006l.828 | HCH1g0497 | 538516 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH1g0497 | 635 | Gene3D | Exocyst complex component Exo70 | 64 | 616 | - | - | |
HCH1g0497 | 635 | SUPERFAMILY | Cullin repeat-like | 78 | 609 | IPR016159 | - | |
HCH1g0497 | 635 | MobiDBLite | consensus disorder prediction | 614 | 635 | - | - | |
HCH1g0497 | 635 | Coils | Coil | 89 | 109 | - | - | |
HCH1g0497 | 635 | MobiDBLite | consensus disorder prediction | 145 | 169 | - | - | |
HCH1g0497 | 635 | MobiDBLite | consensus disorder prediction | 155 | 169 | - | - | |
HCH1g0497 | 635 | Pfam | Exocyst complex component Exo70 N-terminal | 60 | 140 | - | - | |
HCH1g0497 | 635 | Pfam | Exo70 exocyst complex subunit C-terminal | 250 | 606 | IPR046364 | GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro) | |
HCH1g0497 | 635 | FunFam | Exocyst subunit Exo70 family protein | 76 | 616 | - | - | |
HCH1g0497 | 635 | PANTHER | EXOCYST COMPLEX PROTEIN EXO70 | 39 | 610 | IPR004140 | GO:0000145(PANTHER)|GO:0000145(InterPro)|GO:0006887(InterPro)|GO:0006887(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH1g0497 | HCH-Chr1:53786940 | HCH6g0062 | HCH-Chr6:687870 | 4.70E-86 | dispersed | |
HCH1g0497 | HCH-Chr1:53786940 | HCH11g0224 | HCH-Chr11:2061486 | 3.60E-155 | wgd | |
HCH1g0497 | HCH-Chr1:53786940 | HCH2g1121 | HCH-Chr2:53938680 | 1.70E-160 | wgd | |
HCH1g0497 | HCH-Chr1:53786940 | HCH3g1304 | HCH-Chr3:49769931 | 1.90E-148 | wgd | |
HCH1g0497 | HCH-Chr1:53786940 | HCH9g0632 | HCH-Chr9:4206381 | 2.10E-102 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH1g0497 | K07195 | - | csv:101221801 | 729.554 |