Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0497 ATGATGGTATCAGAGACTCCAAAGAGTGGTAGTACATTTATGCAGATTAAAGAATTCTTGGGCTTCTCCCATACTTCCTCCAAAACTCTTCATTCTTCTTCTAGTTTCCTGAGTTCTAGGAGTCCAAGACCATCATCCTATGATGTTTCTGAAGCCATGATGGAGGAAAACATCATAAATGCAGAACCAATTATCTTAAAATGGGATATAGAATCCTCAGAGTACTACAAAATCACCTTCATCTTCCACCATGACAGAAACGAAGCCGAAGAGTTTCTCAAGTCCGTAAAGAACTTGCGGCAAGCCATGGACTTTTTAGTCGCGGAGAACTCGATGTCTAGCAAGCTTGTTCTTGCACAAAAGTTGATGCAAGTTGCCATGAAAAGGCTTGAGAAAGAGTTCTATCAGATTTTGACTCAAAACCGAGATCACCTTGATCCAGAATCCGTTTCTAGTCGGTCGAGTAATTCTCGTAATGAGGAGGATGTGGAGGTTCGAACCGAGAATGAGTTGGAAATTGCTGGCAATTCTATCACAGAGGTGGATAGTGTCACAGCAGTTGCCATGAGTGATCTAAGATCAATAGCTGATTGTATGATTGGCTCTGGCTATGGAAAAGAGTGTGTGAAAATATATAAAGTTATCAGAAAATCGATTGTAGACGAAACATTATATCGTCTTGGAACGGAACGGTTCAAATCTTCTCGCATTCAAAGAATGAATGGGGAGACGCTTGAACATGTGATCAGGAACTGGATGAATGCTATAAAGGTTGCTGTGAATTCTCTGTTTCGTGGAGAAAGAATTCTTTGTGATCATGTATTTGCAAGATCAGCCAACATCAGAGAGTCATGCTTTTCAGAGATAACCAAGGAAGGAGCAAGCATTCTCTTCAGATTCCCAGAGCTGATTGCCAAAGGAAAGAAGGAACGTGAAAAGATTTTCTTGCTGATAGAACTCTATGAGGTGAATTCCGATATTTGGCCCGACATCGAATCGATATTCGACTCCGGATCAACCTCCACAATTAAACTACAAGCTCACACATCACTACTCAAACTCGGAGACTTGATTCGCTCCATTCTTTCCGACTGCGAATCAACCATTCAGAAAGATTCCTCAAAGACTCCAGTTTTAGGGGGCGGGATTCACCCTCTAACCCGATCAGTTATGAATTACATATCCTCACTTGGCGATTACGCAGGAATTCTATCCGACATCATACCAAGTAATCCACATATCCCGAATTCCGATATCGAAACTCTGGCTATGGATGGTTCTATGACATCACCAGTGTCTACACAACTGGCATGGCTTATATTAGTACTTTTGTGCAAGCTTGATAGCAAAGCCGAGTTGTACAAAGATGCGTCGTTGTCGTATCTTTTCCTGGCCAACAATCTTCACTTCATTGTGAAAGTGGTGTGCACCACCAGCCTTAAAAGCCTTCTTGGGGATGATTGGATATCCAACCACATGAATAAGGTTAAACTATATGCTTCAAACTATGAATCCATGGCTTGGTATAAGGTGTTCTCATCTTTACCAGAGAAGAATTTGCAAGAAACTTCACCTCAAATTGCCAAAGACAGCTTTATGAGGTTCAATGAGGCTTTCGAAGCAGCCTACCGGAAACAGATGTCGTGGACTGTCGATGACGGAAAGTTGAGAGACGAGTTAAAGGTGTCAATAGCAAACAAGTTACTGCCAAGGTATCAAGAGTTTTACATTGAATACATTGAGATGCTGAGTGGAGAAAACAACTTGGAGCTGTTTGTGAGGTTTTCTCCTGATGATTTAGGGAACTACTTATCGGATTTGTTCCACGGAATCTCTTCCTCGGGTAGTTCTGGATCATCATCTTCATCTCATTCTTCTCAAGGATGTGTACCAACCCTATCTCATTGA 1908 41.61 MMVSETPKSGSTFMQIKEFLGFSHTSSKTLHSSSSFLSSRSPRPSSYDVSEAMMEENIINAEPIILKWDIESSEYYKITFIFHHDRNEAEEFLKSVKNLRQAMDFLVAENSMSSKLVLAQKLMQVAMKRLEKEFYQILTQNRDHLDPESVSSRSSNSRNEEDVEVRTENELEIAGNSITEVDSVTAVAMSDLRSIADCMIGSGYGKECVKIYKVIRKSIVDETLYRLGTERFKSSRIQRMNGETLEHVIRNWMNAIKVAVNSLFRGERILCDHVFARSANIRESCFSEITKEGASILFRFPELIAKGKKEREKIFLLIELYEVNSDIWPDIESIFDSGSTSTIKLQAHTSLLKLGDLIRSILSDCESTIQKDSSKTPVLGGGIHPLTRSVMNYISSLGDYAGILSDIIPSNPHIPNSDIETLAMDGSMTSPVSTQLAWLILVLLCKLDSKAELYKDASLSYLFLANNLHFIVKVVCTTSLKSLLGDDWISNHMNKVKLYASNYESMAWYKVFSSLPEKNLQETSPQIAKDSFMRFNEAFEAAYRKQMSWTVDDGKLRDELKVSIANKLLPRYQEFYIEYIEMLSGENNLELFVRFSPDDLGNYLSDLFHGISSSGSSGSSSSSHSSQGCVPTLSH 635
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 53786940 53788847 + evm.model.ptg000006l.828 HCH1g0497 538516

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0497 635 Gene3D Exocyst complex component Exo70 64 616 - -
HCH1g0497 635 SUPERFAMILY Cullin repeat-like 78 609 IPR016159 -
HCH1g0497 635 MobiDBLite consensus disorder prediction 614 635 - -
HCH1g0497 635 Coils Coil 89 109 - -
HCH1g0497 635 MobiDBLite consensus disorder prediction 145 169 - -
HCH1g0497 635 MobiDBLite consensus disorder prediction 155 169 - -
HCH1g0497 635 Pfam Exocyst complex component Exo70 N-terminal 60 140 - -
HCH1g0497 635 Pfam Exo70 exocyst complex subunit C-terminal 250 606 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
HCH1g0497 635 FunFam Exocyst subunit Exo70 family protein 76 616 - -
HCH1g0497 635 PANTHER EXOCYST COMPLEX PROTEIN EXO70 39 610 IPR004140 GO:0000145(PANTHER)|GO:0000145(InterPro)|GO:0006887(InterPro)|GO:0006887(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0497 K07195 - - csv:101221801 729.554
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0497 HCH-Chr1:53786940 HCH6g0062 HCH-Chr6:687870 4.70E-86 dispersed
HCH1g0497 HCH-Chr1:53786940 HCH11g0224 HCH-Chr11:2061486 3.60E-155 wgd
HCH1g0497 HCH-Chr1:53786940 HCH2g1121 HCH-Chr2:53938680 1.70E-160 wgd
HCH1g0497 HCH-Chr1:53786940 HCH3g1304 HCH-Chr3:49769931 1.90E-148 wgd
HCH1g0497 HCH-Chr1:53786940 HCH9g0632 HCH-Chr9:4206381 2.10E-102 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH9g0449 . 1 641 EXO70 exocyst subunit family AT5G03540 73.1 3.1e-274 941.0
HCH9g1220 . 6 226 EXO70 exocyst subunit family AT5G03540 76.6 6.6e-91 332.0
HCH9g0449 . 1 641 EXO70 exocyst subunit family AT5G52340 80.2 1.6e-296 1015.0
HCH9g1220 . 6 226 EXO70 exocyst subunit family AT5G52340 79.6 3.2e-95 346.3
HCH9g0449 . 145 637 EXO70 exocyst subunit family AT5G52350 63.6 5.5e-174 607.8
HCH9g1220 . 6 226 EXO70 exocyst subunit family AT5G52350 61.5 3.6e-72 269.6
HCH3g1483 . 3 629 EXO70 exocyst subunit family AT5G58430 66.2 3.3e-241 831.2
HCH5g1180 . 67 658 EXO70 exocyst subunit family AT5G13150 51.6 4.3e-167 585.1
HCH10g1059 . 82 682 EXO70 exocyst subunit family AT5G13150 50.7 1.4e-162 570.1
HCH10g1059 . 78 682 EXO70 exocyst subunit family AT5G13990 55.1 1.8e-187 652.9
HCH6g0062 . 4 622 EXO70 exocyst subunit family AT1G72470 60.4 1.4e-210 729.6
HCH6g0062 . 9 620 EXO70 exocyst subunit family AT1G54090 59.9 2.3e-202 702.2
HCH6g0062 . 1 621 EXO70 exocyst subunit family AT3G14090 60.0 7.8e-211 730.3
HCH3g0443 . 17 662 EXO70 exocyst subunit family AT5G50380 63.4 2.0e-228 788.9
HCH8g1477 . 9 644 EXO70 exocyst subunit family AT5G50380 62.6 1.1e-226 783.1
HCH4g0369 . 1 683 EXO70 exocyst subunit family AT4G31540 72.6 6.5e-299 1023.1
HCH4g1569 . 6 639 EXO70 exocyst subunit family AT4G31540 50.4 2.9e-182 635.6
HCH1g0497 . 22 630 EXO70 exocyst subunit family AT3G55150 52.3 4.9e-168 588.2
HCH1g0497 . 22 630 EXO70 exocyst subunit family AT2G39380 52.4 7.1e-167 584.3
HCH11g0224 . 23 633 EXO70 exocyst subunit family AT3G09520 53.8 1.7e-173 606.3
HCH2g1121 . 23 606 EXO70 exocyst subunit family AT5G59730 50.4 3.4e-161 565.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006856 2 1 1 2 2 1 0 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 0 36