Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0503 ATGAGTCTCCATTTTTTCTTCTGGGGTTTCTGTTTTTTGTGTTTGTTATCTGTCTCTGTAGGATTCAATCCTGAAGATAATTTTCTGATTGATTGTGGATCTTTATCTAACCAAACTGTGGGAGATCGTTTATTTCTATCTGATGATTTTTATTCTGATATTCTTTCAAATTCTAGTAGAATTCTTTTGTCTACTACTTCAAGTATAGTATCAAGTTCTTCTTTTACTTTAAATTCAGCTCTTTTTAGAACTGCAAGAATATTTGAAACAACTACAAATTACGACTTCAAAATTAAGAAGCAAGGCCGGCATTGGATTCGTCTCTATTTTTACCCTTTTGTGTCTGAGAAGTTCAATTTGAGCTTAGCTAAGTTTTCGGTTTCTGCTCAAAAGATTTCTCTCCTCAAAGAGTTTCAGATAGATAGTGATTCTATTGTCAAGGAGTATGATTTGAATATAACTTCTAGTAATCTAGTTCTTACGTTTACTCCGGTCGCGAATTCGTTTGCTTTCATCAATGCCTTGGAAGTTGTTTCCATCCCTGATGAACTTATTCCTCCGGATGCTCCTGCTATTGATAAAATGGGGAATGGGGAGAATTTGTGGGGTAAGGCATTAGAGACGGTTGCTAGAGTGAATATGGGCAATGAAACAGTGTCTCCGGATAACGATACTCTATCGCGCCTTTGGGTTGCGGATGCTAAATTTTTGACGCATAATAATCTCGCTATTGTTGCGAAGTTTGTGTCGAATATCTCGAGAGTCAATTTCACTAGAGATTGGCCATCGGAAATTACAGCTCCTCGGTCTGTGTATGGGACGGCAACTCAGTTAAGGTCTGAAATGGATATCACCATCAATGCTAATGTATCGTGGTCTTTCGATGTTGATCCGGGCTTTGATTATCTAATTCGTTTTCATTTCTGTGATATTATAAGTACTGCTCCTGGAGGGTTATTCTTCAATGTTTATGTTAACTCGTGGCTAGTTAAGGAACATTTGGATCTGAGTAATCTCTCTTCAAACATCCTAGGTGCACCCTATGTCATGGATGTCACAGCAAGTGCAGCTGACAGCTCTGTGTTCAAAGTAAGTGTCGGCCCTTCGACTATTCAACATTCTATCTCAAACGCCATTCTTAACGGGCTCGAAATTATGAAAATAAGCAATTCTTTGGGGAGCCTTGATGAGACTTTCCTTGATTCTAAGCCAAAGAAAAAAGTAGGCCTTATAGCAGGCTCGGTTGTTGGACTGCTCATAGTTGCGGTTTTGGCCGCTGTTGTAATTGTACTGTGCAGAAGAAGAAGAAAATCAGCACTTGTGAGTCATTCAAAGGAAGAGGAAAATTTTGGTATGAACGGATCTGCTTTCATTTCTGATTCGAAAATCGGGTATCGGTATCCACTTGTAGCTATTCAAGAAGCTACTGATAATTTCAGTGAGAGTTTAGCCATTGGTCTTGGTGGGTTTGGGAAGGTTTACAAAGGAATGCTGAGGGACAATACAGAAGTGGCAGTAAAAAGAGGGGCTTCAAAATCTCAGCAGGGTCTTGCAGAGTTTCGAACCGAAATCGAGATGTTATCCCAGTTCCGCCATCGTCATCTGGTATCACTAATTGGGTACTGTGATGAGCAAAATGAAATGATTATAATTTATGAGTACATGGAGAAGGGGACCCTTAAAGAACATTTATATGGATCAGATCTTCCAAGTTTAAGCTGGAAACAAAGGCTTGATATATGCATTGGATCAGCCAGAGGACTTCACTATCTTCACACTGGCTCTGCAAGGAAAATCATACACCGAGATGTCAAAACTGCAAATATTCTCCTAGACCACAACTATATGGCCAAAGTTGCAGATTTTGGACTTTCAAAGACTGGCCCCGAGATTGATAAAACACATGTTAGTACAGCAGTGAAAGGAAGCTTCGGCTATCTAGATCCCGAGTATTTGACAACGCAACAACTGACCGAAAAATCAGATGTGTACTCTTTTGGAGTGGTTATGTTTGAAGTCCTTTGTGGTAGGCCTGTCATTGATCCATCTCTTCCAAGGGAGAAGGTGAATCTAATTGAATGGGTAATGAAGAGGTGGGATAGAGACCAACTTGAGGAACTTGTAGATACTCGTCTTGCCGGACAAATCAAGCTGGATTCTCTGAGATTATATGTAGAGACAGCTGAAAAATGCTTGGCAGAATGTGGCGTCAATCGGCCTACGATGGGAAATGTTCTGTGGAATCTGGATTGTGCACTTCAACTCCAAGGGAATGAAAGATCTGATCATACCAAGGAATCATCTTCACAAGCTGATCTTACCAACCACTGGGAAGCTAGTGTATCAACTACTCAATTCAGCGTGGCAAGTGCAGATGATGTCGTCGGTGTTTCGATGAGTAAGGTATTCGCTCAAATGGTTCGAGAAGATATGCGGTAG 2439 40.43 MSLHFFFWGFCFLCLLSVSVGFNPEDNFLIDCGSLSNQTVGDRLFLSDDFYSDILSNSSRILLSTTSSIVSSSSFTLNSALFRTARIFETTTNYDFKIKKQGRHWIRLYFYPFVSEKFNLSLAKFSVSAQKISLLKEFQIDSDSIVKEYDLNITSSNLVLTFTPVANSFAFINALEVVSIPDELIPPDAPAIDKMGNGENLWGKALETVARVNMGNETVSPDNDTLSRLWVADAKFLTHNNLAIVAKFVSNISRVNFTRDWPSEITAPRSVYGTATQLRSEMDITINANVSWSFDVDPGFDYLIRFHFCDIISTAPGGLFFNVYVNSWLVKEHLDLSNLSSNILGAPYVMDVTASAADSSVFKVSVGPSTIQHSISNAILNGLEIMKISNSLGSLDETFLDSKPKKKVGLIAGSVVGLLIVAVLAAVVIVLCRRRRKSALVSHSKEEENFGMNGSAFISDSKIGYRYPLVAIQEATDNFSESLAIGLGGFGKVYKGMLRDNTEVAVKRGASKSQQGLAEFRTEIEMLSQFRHRHLVSLIGYCDEQNEMIIIYEYMEKGTLKEHLYGSDLPSLSWKQRLDICIGSARGLHYLHTGSARKIIHRDVKTANILLDHNYMAKVADFGLSKTGPEIDKTHVSTAVKGSFGYLDPEYLTTQQLTEKSDVYSFGVVMFEVLCGRPVIDPSLPREKVNLIEWVMKRWDRDQLEELVDTRLAGQIKLDSLRLYVETAEKCLAECGVNRPTMGNVLWNLDCALQLQGNERSDHTKESSSQADLTNHWEASVSTTQFSVASADDVVGVSMSKVFAQMVREDMR 812
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 53866776 53869214 + evm.model.ptg000006l.822 HCH1g0503 538522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0503 812 FunFam Putative receptor-like protein kinase 27 181 - -
HCH1g0503 812 ProSiteProfiles Protein kinase domain profile. 479 753 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH1g0503 812 SMART serkin_6 479 752 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH1g0503 812 FunFam Receptor-like protein kinase FERONIA 555 771 - -
HCH1g0503 812 FunFam receptor-like protein kinase FERONIA 442 554 - -
HCH1g0503 812 SUPERFAMILY Protein kinase-like (PK-like) 461 749 IPR011009 -
HCH1g0503 812 ProSitePatterns Serine/Threonine protein kinases active-site signature. 599 611 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH1g0503 812 Gene3D Transferase(Phosphotransferase) domain 1 555 778 - -
HCH1g0503 812 CDD STKc_IRAK 485 746 - -
HCH1g0503 812 PANTHER OS01G0750732 PROTEIN 373 776 IPR050885 -
HCH1g0503 812 FunFam Receptor-like protein kinase FERONIA 205 390 - -
HCH1g0503 812 Gene3D - 204 390 - -
HCH1g0503 812 Gene3D - 27 180 - -
HCH1g0503 812 ProSitePatterns Protein kinases ATP-binding region signature. 485 507 IPR017441 GO:0005524(InterPro)
HCH1g0503 812 Pfam Protein tyrosine and serine/threonine kinase 484 677 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH1g0503 812 Pfam Malectin-like domain 30 388 IPR024788 -
HCH1g0503 812 Gene3D Phosphorylase Kinase; domain 1 439 554 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0503 HCH-Chr1:53866776 HCH8g1279 HCH-Chr8:47967930 1.10E-188 dispersed
HCH1g0503 HCH-Chr1:53866776 HCH2g1125 HCH-Chr2:53975542 3.40E-238 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81277 PF12819 Malectin_like 1.50E-31 CL0202 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0503 - - - 0.0