Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0512 ATGGTTTCGGAAACATTTATGAAGATTGTATCACCTTGCTGGAAACCTTCTGTTGAGGGGGAGAATTCTAGTAGAGGTGGGGATGCGTGTGGTCGGGTAGATGGGTTGTTGTGGTACAAAGATTCTGGTCATCATATGAATGGTGAATTCTCGATGGCGGTTATTCAGGCAAATAATTTGTTGGAGGATCGCAGCCAACTTGAGTCGGGGCCATTGAGTTCATTTGAATCAGGTCCTTATGGAACATTTGTTGGCATCTATGATGGCCATGGAGGTCCAGAAGCTGCACAATTTGTAAATGATCATCTGTTTAATAATATGAAGACTTTTCATGGTGCAGAATTGGCTTCAGAAAATCAGGGATTATCAACTGAAACTATCCATAAAGCATTTTTGGAGACAGAGGAAGAATTCTTGTCTCTTGTAAAGAAACAGTGGCTGAATAAGCCACAGATTGCTTCTGTTGGTTCATGCTGTTTGGTAGGCATAGTATGTCGTGGATATCTGTATATTGCTAATGCTGGTGATTCTAGGGTGGTACTGGGAAGACTTGAAAAGGCTCTCAAAGTGGTTAAAGCTGTCCAGCTATCATCTGAGCACAATGCAAGCATTGAAACTGTGAGAGAGGAGTTGCACTCGTTGCATCCCAATGATCCACAGATTGTGGTGTTAAAGCACAAGGTGTGGCGTGTAAAGGGTGTTATACAGGTTTCAAGATCCCTTGGTGATGCTTATCTGAAGAAATCAGAGTTCAACAAAGAACCACTTTTGGCGAAGTTCAGATTACCTGAACCATTCCATGAGCCTATTCTTAAAGCTGAGCCTGCTATATTAGTGCACAAACTCCACCCAGAGGATCGGTTTCTGATCTTTGCTTCAGACGGCCTTTGGGAGTATATCAGCAATCAAGAGGCTGTTGACATCGTTCAAAGTTGTCCACGTAATGGGATTGCAAGGAAACTTGTTAAAGCTGCCCTTCATGAGGCTGCTAAAAAAAGAGAAATGAGATACTCAGACTTGAAGAAGATTGATCGCGGGGTGAGGAGACATTTTCACGACGATATCACCGTTATAGTTTTGTTCCTTGATTCCCATCTGATTAGTCGCAGTTCGTGCCGTGGACCTCAGCTTTCAATCAGAGGAGGTGCTGGTACTCCTATCCATCATAGCTTGTGA 1176 43.11 MVSETFMKIVSPCWKPSVEGENSSRGGDACGRVDGLLWYKDSGHHMNGEFSMAVIQANNLLEDRSQLESGPLSSFESGPYGTFVGIYDGHGGPEAAQFVNDHLFNNMKTFHGAELASENQGLSTETIHKAFLETEEEFLSLVKKQWLNKPQIASVGSCCLVGIVCRGYLYIANAGDSRVVLGRLEKALKVVKAVQLSSEHNASIETVREELHSLHPNDPQIVVLKHKVWRVKGVIQVSRSLGDAYLKKSEFNKEPLLAKFRLPEPFHEPILKAEPAILVHKLHPEDRFLIFASDGLWEYISNQEAVDIVQSCPRNGIARKLVKAALHEAAKKREMRYSDLKKIDRGVRRHFHDDITVIVLFLDSHLISRSSCRGPQLSIRGGAGTPIHHSL 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 53977394 53985111 + evm.model.ptg000006l.813 HCH1g0512 538531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0512 391 ProSitePatterns PPM-type phosphatase domain signature. 83 91 IPR000222 GO:0043169(InterPro)
HCH1g0512 391 CDD PP2Cc 50 362 IPR001932 -
HCH1g0512 391 SUPERFAMILY PP2C-like 58 363 IPR036457 -
HCH1g0512 391 Gene3D - 39 371 IPR036457 -
HCH1g0512 391 SMART PP2C_4 41 360 IPR001932 -
HCH1g0512 391 PANTHER PROTEIN PHOSPHATASE 42 361 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
HCH1g0512 391 Pfam Protein phosphatase 2C 81 331 IPR001932 -
HCH1g0512 391 ProSiteProfiles PPM-type phosphatase domain profile. 49 362 IPR001932 -
HCH1g0512 391 FunFam Phosphatase 2C family protein 38 372 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0512 HCH-Chr1:53977394 HCH2g0571 HCH-Chr2:49532998 4.80E-142 dispersed
HCH1g0512 HCH-Chr1:53977394 HCH11g0233 HCH-Chr11:2132814 3.30E-151 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0512 K01102 - csv:101220760 685.641