Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0516 ATGGGATGGTTTCTGTGTTCTGGAAGTTCAAATAAGAAACCAAAACATCCAATGAAGCAAGATGATCCAATTCCATCAACCTCTGAAAAATTGATAGTGAAGCCAGCATTTAGTGCGAAGAACGAGACCTTAAAAGATGCAGGTTCTGATCAGATTTCGGCACAAACATTTACGTTCACATTTCGAGAGTTGGCAGCTGCAACAAAGTATTTTAGGGCAGACTGTCTTTTAGGTGAAGGAGGTTTTGGTCGAGTATACAAAGGACGTTTGGAGAGCATAAATCAGGTAGTTGCCATCAAGCAGCTTGATCGAAATGGGCTGCAAGGAAACAGGGAATTCCTCGTTGAAGTACTAATGTTAAGCCTACTCCATCACCCAAATCTTGTTAACTTAATTGGTTATTGTGCGGATGGTGATCAAAGACTTTTGGTTTATGAATACATGCCATTGGGATCTTTGGAAGACCATCTCCACGATTTGCCACCTGATAAAAAACGACTTGACTGGAATACAAGAATGAAAATAGCTGCAGGTGCTGCCAAGGGCTTAGAGTATTTGCATGACAAAGCTAACCCACCTGTTATATATCGTGATTTGAAATGCTCTAATATCCTGCTCGGTGAAGGTTACCATCCTAAGCTATCTGATTTTGGCTTGGCAAAATTGGGTCCTGTGGGGGATAACACTCATGTTTCCACAAGAGTGATGGGAACTTATGGGTATTGTGCTCCAGAATATGCCATGACTGGCCAGCTCACCTTAAAATCAGATGTTTATAGCTTTGGGGTTGTTCTGCTAGAAATTATTACAGGAAGAAAAGCTATTGACAATTCAAGAGCTGCAGGGGAACATAATTTGGTCGCATGGGCACATCCTTTATTTAAAGATCGAAGGAAATTTTGGCAGATGGCTGATCCTTTGCTCCAAGGACAATACCCAGTCAGGGGCTTATACCAAGCTCTTGCAGTAGCTGCAATGTGTGTTCAAGAACAGCCTCATATGCGGCCTCTTATTGCGGACGTCGTCACAGCCCTTACGTACCTCGCTTCCCAAAATTTTGATCCCGAAACCCAGCCAGTTCAAAGCTCTCGCAGTAGTTCATCCGCGTCTAAATCTAGAAGAGAACTGTGA 1131 42.79 MGWFLCSGSSNKKPKHPMKQDDPIPSTSEKLIVKPAFSAKNETLKDAGSDQISAQTFTFTFRELAAATKYFRADCLLGEGGFGRVYKGRLESINQVVAIKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEYMPLGSLEDHLHDLPPDKKRLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKCSNILLGEGYHPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRKAIDNSRAAGEHNLVAWAHPLFKDRRKFWQMADPLLQGQYPVRGLYQALAVAAMCVQEQPHMRPLIADVVTALTYLASQNFDPETQPVQSSRSSSSASKSRREL 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 54013798 54017805 + evm.model.ptg000006l.809 HCH1g0516 538535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0516 376 ProSitePatterns Protein kinases ATP-binding region signature. 77 100 IPR017441 GO:0005524(InterPro)
HCH1g0516 376 FunFam Serine/threonine-protein kinase PBS1 148 363 - -
HCH1g0516 376 FunFam Serine/threonine-protein kinase PBS1 42 147 - -
HCH1g0516 376 MobiDBLite consensus disorder prediction 1 26 - -
HCH1g0516 376 SMART serkin_6 71 348 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH1g0516 376 Gene3D Transferase(Phosphotransferase) domain 1 148 370 - -
HCH1g0516 376 MobiDBLite consensus disorder prediction 355 369 - -
HCH1g0516 376 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH1g0516 376 SUPERFAMILY Protein kinase-like (PK-like) 59 364 IPR011009 -
HCH1g0516 376 MobiDBLite consensus disorder prediction 355 376 - -
HCH1g0516 376 Gene3D Phosphorylase Kinase; domain 1 33 147 - -
HCH1g0516 376 Pfam Protein tyrosine and serine/threonine kinase 75 289 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH1g0516 376 PANTHER OS07G0668900 PROTEIN 30 371 - -
HCH1g0516 376 ProSiteProfiles Protein kinase domain profile. 71 348 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH1g0516 376 CDD STKc_IRAK 77 346 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0516 HCH-Chr1:54013798 HCH6g1669 HCH-Chr6:49554733 1.10E-159 dispersed
HCH1g0516 HCH-Chr1:54013798 HCH11g0239 HCH-Chr11:2172097 2.00E-161 wgd
HCH1g0516 HCH-Chr1:54013798 HCH2g1138 HCH-Chr2:54046726 1.40E-130 wgd
HCH1g0516 HCH-Chr1:54013798 HCH3g1290 HCH-Chr3:49108702 3.00E-149 wgd
HCH1g0516 HCH-Chr1:54013798 HCH9g0594 HCH-Chr9:3996829 1.10E-43 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81278 PF07714 PK_Tyr_Ser-Thr 5.00E-46 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0516 - - - 0.0