Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0521 ATGTTGGATCTTAATTTTAGCATTACCCATCAAAATGATTCCATTAACTGTGATGAAAACAACAGAATATCAATGGAAGATTCTGAAACCTCAAATTCCTCAATTGTTAATGCGGAAGAAGCGTTTCCCACTCCCAACAACAGTAGCAGAGATGAAGACTCTTCCGTTCTCATCTTCGACATCCTCAAAAAGGACATCGACATCGACACCGTCAAAGCTGTCGTAAATGGGTTGCCATCGCCGGAATTAGTAACCAGACCTCTTTTCCCGCTCACCGGAAATAATGGAGTTGGATGGGATTCACGTCCTGGTGGGTTGAGTGTTTCTCCTTTGCCAAGGCCTCAATGGTTGAACTTATCGGCGCCCGATGCCGGTGCCGATGGGGAGGTGGAGCTGAGAATTTTACAACAAAAGCAGCAGCCGGCGAGGAAAAGCCGGCGAGGACCACGGTCACGAAGCTCTCAGTATCGAGGAGTTACGTTTTATCGAAGAACAGGAAGATGGGAATCTCATATTTGGGATTGTGGGAAACAAGTATATTTAGGTGGGTTTGATACTGCTCATGCTGCAGCAAGAGCGTATGATCGAGCGGCGATCAAGTTCCGGGGAGTCGATGCCGATATCAATTTCAATATAAGTGATTATGATGAAGATATGAAACAGATGAAGAATCTAGGCAAAGAAGAATTCGTTCAAGTACTTCGTCGGCAGAGTAACGGATTTTCTCGTGGAGGATCGAAATTGAGAGGATTGTCTCTCCAGAAATATGGAAGATGGGAAACTCAGATGGGGCAAAACATAGGCAAGAAGATATATGATGGAGATCATCAGGCCATTAAAAGCCATGCAAGGGAAGCAGTGATTGCCAACTTTGAGCAGCAAAAGTCTTATAAAGGAGAGACAATGCTAGAATCAAGCAATGGAGGCAATGGCCATAATCTTGATTTGAGCCTTGGGATTTCTCTGACTTCTGGTGTTTCAAAAGCAAATGAGAGCAGTGGAATCATTAACTACCACCATAATAATGCTTCCCGCAAGCTCAACATTGAGAGACCAAAGAATGAAAACAATGCTTCTGCATGTGTGGCTTCACAACAGCCTCATATTCTTTCATTGGATTCAAAACATCATCCTTCTTCATGGCCTGGCTTTTACTCTGGTTTCTTGGCAAATAATGAGGAAAGAGCTACTACAGAGAAGAGAAATGAAGGTATTTGTGCAACAAAAGTCCCAAGTTGGGGATGGCAAATGCAAGGAAATGTAAAAGGTCATATTTCCAATGGTGCAGCATCATCAGGATTCTCTTCCTCTGCTACTTCTTCTCCTCTTCCTCTCAATTCTTCACCATATTCAATCCCTCCACTTTATGCAAAAAACAACCACACTTTGTGCTTTCCATTACCTACCACACCTTCCACAAATTCTTGA 1428 43.21 MLDLNFSITHQNDSINCDENNRISMEDSETSNSSIVNAEEAFPTPNNSSRDEDSSVLIFDILKKDIDIDTVKAVVNGLPSPELVTRPLFPLTGNNGVGWDSRPGGLSVSPLPRPQWLNLSAPDAGADGEVELRILQQKQQPARKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNISDYDEDMKQMKNLGKEEFVQVLRRQSNGFSRGGSKLRGLSLQKYGRWETQMGQNIGKKIYDGDHQAIKSHAREAVIANFEQQKSYKGETMLESSNGGNGHNLDLSLGISLTSGVSKANESSGIINYHHNNASRKLNIERPKNENNASACVASQQPHILSLDSKHHPSSWPGFYSGFLANNEERATTEKRNEGICATKVPSWGWQMQGNVKGHISNGAASSGFSSSATSSPLPLNSSPYSIPPLYAKNNHTLCFPLPTTPSTNS 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 54130940 54133999 + evm.model.ptg000006l.804 HCH1g0521 538540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0521 475 CDD AP2 155 213 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH1g0521 475 SMART rav1_2 155 217 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH1g0521 475 SUPERFAMILY DNA-binding domain 154 213 IPR016177 GO:0003677(InterPro)
HCH1g0521 475 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 51 364 - -
HCH1g0521 475 Pfam AP2 domain 155 203 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH1g0521 475 MobiDBLite consensus disorder prediction 137 156 - -
HCH1g0521 475 FunFam AP2-like ethylene-responsive transcription factor 154 213 - -
HCH1g0521 475 Gene3D AP2/ERF domain 154 213 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH1g0521 475 ProSiteProfiles AP2/ERF domain profile. 155 211 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0521 HCH-Chr1:54130940 HCH2g0046 HCH-Chr2:3409429 3.90E-61 dispersed
HCH1g0521 HCH-Chr1:54130940 HCH11g0244 HCH-Chr11:2206554 1.40E-74 wgd
HCH1g0521 HCH-Chr1:54130940 HCH2g1142 HCH-Chr2:54083671 1.20E-81 wgd
HCH1g0521 HCH-Chr1:54130940 HCH9g0608 HCH-Chr9:4070787 5.60E-68 wgd
HCH1g0521 HCH-Chr1:54130940 HCH9g0608 HCH-Chr9:4070787 5.60E-68 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33055 PF00847 AP2 6.80E-10 CL0081 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0521 K09284 - csv:101204131 420.624