Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH1g0521 | ATGTTGGATCTTAATTTTAGCATTACCCATCAAAATGATTCCATTAACTGTGATGAAAACAACAGAATATCAATGGAAGATTCTGAAACCTCAAATTCCTCAATTGTTAATGCGGAAGAAGCGTTTCCCACTCCCAACAACAGTAGCAGAGATGAAGACTCTTCCGTTCTCATCTTCGACATCCTCAAAAAGGACATCGACATCGACACCGTCAAAGCTGTCGTAAATGGGTTGCCATCGCCGGAATTAGTAACCAGACCTCTTTTCCCGCTCACCGGAAATAATGGAGTTGGATGGGATTCACGTCCTGGTGGGTTGAGTGTTTCTCCTTTGCCAAGGCCTCAATGGTTGAACTTATCGGCGCCCGATGCCGGTGCCGATGGGGAGGTGGAGCTGAGAATTTTACAACAAAAGCAGCAGCCGGCGAGGAAAAGCCGGCGAGGACCACGGTCACGAAGCTCTCAGTATCGAGGAGTTACGTTTTATCGAAGAACAGGAAGATGGGAATCTCATATTTGGGATTGTGGGAAACAAGTATATTTAGGTGGGTTTGATACTGCTCATGCTGCAGCAAGAGCGTATGATCGAGCGGCGATCAAGTTCCGGGGAGTCGATGCCGATATCAATTTCAATATAAGTGATTATGATGAAGATATGAAACAGATGAAGAATCTAGGCAAAGAAGAATTCGTTCAAGTACTTCGTCGGCAGAGTAACGGATTTTCTCGTGGAGGATCGAAATTGAGAGGATTGTCTCTCCAGAAATATGGAAGATGGGAAACTCAGATGGGGCAAAACATAGGCAAGAAGATATATGATGGAGATCATCAGGCCATTAAAAGCCATGCAAGGGAAGCAGTGATTGCCAACTTTGAGCAGCAAAAGTCTTATAAAGGAGAGACAATGCTAGAATCAAGCAATGGAGGCAATGGCCATAATCTTGATTTGAGCCTTGGGATTTCTCTGACTTCTGGTGTTTCAAAAGCAAATGAGAGCAGTGGAATCATTAACTACCACCATAATAATGCTTCCCGCAAGCTCAACATTGAGAGACCAAAGAATGAAAACAATGCTTCTGCATGTGTGGCTTCACAACAGCCTCATATTCTTTCATTGGATTCAAAACATCATCCTTCTTCATGGCCTGGCTTTTACTCTGGTTTCTTGGCAAATAATGAGGAAAGAGCTACTACAGAGAAGAGAAATGAAGGTATTTGTGCAACAAAAGTCCCAAGTTGGGGATGGCAAATGCAAGGAAATGTAAAAGGTCATATTTCCAATGGTGCAGCATCATCAGGATTCTCTTCCTCTGCTACTTCTTCTCCTCTTCCTCTCAATTCTTCACCATATTCAATCCCTCCACTTTATGCAAAAAACAACCACACTTTGTGCTTTCCATTACCTACCACACCTTCCACAAATTCTTGA | 1428 | 43.21 | MLDLNFSITHQNDSINCDENNRISMEDSETSNSSIVNAEEAFPTPNNSSRDEDSSVLIFDILKKDIDIDTVKAVVNGLPSPELVTRPLFPLTGNNGVGWDSRPGGLSVSPLPRPQWLNLSAPDAGADGEVELRILQQKQQPARKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNISDYDEDMKQMKNLGKEEFVQVLRRQSNGFSRGGSKLRGLSLQKYGRWETQMGQNIGKKIYDGDHQAIKSHAREAVIANFEQQKSYKGETMLESSNGGNGHNLDLSLGISLTSGVSKANESSGIINYHHNNASRKLNIERPKNENNASACVASQQPHILSLDSKHHPSSWPGFYSGFLANNEERATTEKRNEGICATKVPSWGWQMQGNVKGHISNGAASSGFSSSATSSPLPLNSSPYSIPPLYAKNNHTLCFPLPTTPSTNS | 475 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 54130940 | 54133999 | + | evm.model.ptg000006l.804 | HCH1g0521 | 538540 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH1g0521 | 475 | CDD | AP2 | 155 | 213 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH1g0521 | 475 | SMART | rav1_2 | 155 | 217 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH1g0521 | 475 | SUPERFAMILY | DNA-binding domain | 154 | 213 | IPR016177 | GO:0003677(InterPro) | |
HCH1g0521 | 475 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 51 | 364 | - | - | |
HCH1g0521 | 475 | Pfam | AP2 domain | 155 | 203 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH1g0521 | 475 | MobiDBLite | consensus disorder prediction | 137 | 156 | - | - | |
HCH1g0521 | 475 | FunFam | AP2-like ethylene-responsive transcription factor | 154 | 213 | - | - | |
HCH1g0521 | 475 | Gene3D | AP2/ERF domain | 154 | 213 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH1g0521 | 475 | ProSiteProfiles | AP2/ERF domain profile. | 155 | 211 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH1g0521 | HCH-Chr1:54130940 | HCH2g0046 | HCH-Chr2:3409429 | 3.90E-61 | dispersed | |
HCH1g0521 | HCH-Chr1:54130940 | HCH11g0244 | HCH-Chr11:2206554 | 1.40E-74 | wgd | |
HCH1g0521 | HCH-Chr1:54130940 | HCH2g1142 | HCH-Chr2:54083671 | 1.20E-81 | wgd | |
HCH1g0521 | HCH-Chr1:54130940 | HCH9g0608 | HCH-Chr9:4070787 | 5.60E-68 | wgd | |
HCH1g0521 | HCH-Chr1:54130940 | HCH9g0608 | HCH-Chr9:4070787 | 5.60E-68 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
33055 | PF00847 | AP2 | 6.80E-10 | CL0081 | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH1g0521 | K09284 | - | csv:101204131 | 420.624 |