Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0524 ATGGCGGAGGCTCCGACGAGTCCAGCCGGAGGAAGCCACGAAAGCGGCGGCGAACGAAGCCCTAATACAGGCCATCGTGAACAAGACCGTTTTCTTCCGATCGCTAATATTAGCCGGATCATGAAAAAGGCTTTACCTGCTAATGGAAAGATCGCTAAGGATGCTAAAGATACCGTTCAGGAATGCGTTTCTGAATTTATTAGCTTTATTACCAGCGAGGCGAGTGATAAGTGCCAAAAGGAAAAAAGGAAGACTATTAATGGTGATGATTTGTTGTGGGCAATGGCAACTTTGGGTTTCGAGGAGTATATTGATCCGCTTAAGTCGTATTTAAGTCGGTACAGAGAGGGTGATGCTAAAGGATCTTCAAGGGGTGGTGATGACTCTGTTAAAAGAGAACCAGTCGGGGTCTTGCCTGGTCAAAATTCTCAGCAGTTCATGCACCAGGGAACAATGGCCTACATTAATGCCCAAGGACAGCATATGATCATTCCATCAATGCCAAATAATGAATAG 516 45.54 MAEAPTSPAGGSHESGGERSPNTGHREQDRFLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEEYIDPLKSYLSRYREGDAKGSSRGGDDSVKREPVGVLPGQNSQQFMHQGTMAYINAQGQHMIIPSMPNNE 171
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 54154334 54157672 + evm.model.ptg000006l.801 HCH1g0524 538543

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0524 171 ProSitePatterns NF-YB/HAP3 subunit signature. 62 78 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH1g0524 171 Gene3D Histone, subunit A 19 151 IPR009072 GO:0046982(InterPro)
HCH1g0524 171 MobiDBLite consensus disorder prediction 117 143 - -
HCH1g0524 171 SUPERFAMILY Histone-fold 28 125 IPR009072 GO:0046982(InterPro)
HCH1g0524 171 MobiDBLite consensus disorder prediction 117 131 - -
HCH1g0524 171 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 31 95 IPR003958 -
HCH1g0524 171 MobiDBLite consensus disorder prediction 1 29 - -
HCH1g0524 171 FunFam Nuclear transcription factor Y subunit B-3 20 146 - -
HCH1g0524 171 PRINTS CCAAT-binding transcription factor subunit A signature 59 77 - -
HCH1g0524 171 PRINTS CCAAT-binding transcription factor subunit A signature 97 115 - -
HCH1g0524 171 PRINTS CCAAT-binding transcription factor subunit A signature 78 96 - -
HCH1g0524 171 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 18 143 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(InterPro)|GO:0016602(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0524 K08065 - - csv:101223123 293.893
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0524 HCH-Chr1:54154334 HCH2g0653 HCH-Chr2:50302037 3.50E-44 dispersed
HCH1g0524 HCH-Chr1:54154334 HCH11g0246 HCH-Chr11:2228074 6.30E-62 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH6g0880 . 51 151 CCAAT-HAP3 Transcription Factor Family AT5G47670 85.1 3.5e-47 185.3
HCH2g0653 . 6 117 CCAAT-HAP3 Transcription Factor Family AT5G47670 61.6 2.3e-38 156.0
HCH6g0880 . 53 173 CCAAT-HAP3 Transcription Factor Family AT1G21970 74.0 2.9e-49 192.2
HCH2g0653 . 1 129 CCAAT-HAP3 Transcription Factor Family AT4G14540 87.7 1.2e-57 219.5
HCH6g0875 . 1 131 CCAAT-HAP3 Transcription Factor Family AT4G14540 76.1 1.7e-48 189.1
HCH13g1276 . 22 120 CCAAT-HAP3 Transcription Factor Family AT4G14540 90.9 1.2e-46 183.0
HCH11g0246 . 22 124 CCAAT-HAP3 Transcription Factor Family AT4G14540 81.6 8.7e-45 176.8
HCH1g0524 . 11 126 CCAAT-HAP3 Transcription Factor Family AT4G14540 72.4 2.8e-43 171.8
HCH4g0997 . 43 146 CCAAT-HAP3 Transcription Factor Family AT4G14540 73.1 5.8e-41 164.1
HCH4g0997 . 44 148 CCAAT-HAP3 Transcription Factor Family AT1G09030 71.4 1.5e-37 152.5
HCH8g0114 . 6 117 CCAAT-HAP3 Transcription Factor Family AT1G09030 65.2 3.4e-37 151.4
HCH1g0524 . 1 116 CCAAT-HAP3 Transcription Factor Family AT2G38880 80.2 1.2e-48 189.5
HCH11g0246 . 1 115 CCAAT-HAP3 Transcription Factor Family AT2G38880 79.1 3.6e-48 188.0
HCH2g0653 . 1 113 CCAAT-HAP3 Transcription Factor Family AT2G38880 72.6 5.9e-43 170.6
HCH6g0875 . 1 118 CCAAT-HAP3 Transcription Factor Family AT2G38880 71.2 1.0e-42 169.9
HCH13g1276 . 8 115 CCAAT-HAP3 Transcription Factor Family AT2G38880 72.2 2.5e-41 165.2
HCH4g0997 . 35 134 CCAAT-HAP3 Transcription Factor Family AT2G38880 74.0 3.2e-41 164.9
HCH4g0997 . 41 152 CCAAT-HAP3 Transcription Factor Family AT2G47810 76.8 6.0e-46 180.6
HCH2g0653 . 18 117 CCAAT-HAP3 Transcription Factor Family AT2G47810 71.0 5.4e-39 157.5
HCH6g0875 . 27 122 CCAAT-HAP3 Transcription Factor Family AT2G47810 75.0 9.2e-39 156.8
HCH13g1276 . 25 120 CCAAT-HAP3 Transcription Factor Family AT2G47810 74.0 1.0e-37 153.3
HCH11g0246 . 24 119 CCAAT-HAP3 Transcription Factor Family AT2G47810 70.8 8.6e-37 150.2
HCH11g0246 . 1 174 CCAAT-HAP3 Transcription Factor Family AT2G37060 75.1 1.5e-63 239.2
HCH1g0524 . 1 171 CCAAT-HAP3 Transcription Factor Family AT2G37060 68.2 4.5e-55 211.1
HCH2g0653 . 1 116 CCAAT-HAP3 Transcription Factor Family AT2G37060 71.5 1.2e-44 176.4
HCH6g0875 . 1 121 CCAAT-HAP3 Transcription Factor Family AT2G37060 68.5 1.5e-42 169.5
HCH13g1276 . 24 117 CCAAT-HAP3 Transcription Factor Family AT2G37060 80.9 1.4e-40 162.9
HCH4g0997 . 42 137 CCAAT-HAP3 Transcription Factor Family AT2G37060 72.9 5.0e-38 154.5
HCH2g0653 . 22 123 CCAAT-HAP3 Transcription Factor Family AT2G13570 81.4 2.0e-44 176.0
HCH13g1276 . 12 120 CCAAT-HAP3 Transcription Factor Family AT2G13570 79.1 2.6e-44 175.6
HCH11g0246 . 7 125 CCAAT-HAP3 Transcription Factor Family AT2G13570 67.7 1.3e-43 173.3
HCH4g0997 . 43 138 CCAAT-HAP3 Transcription Factor Family AT2G13570 79.2 5.9e-41 164.5
HCH6g0875 . 27 122 CCAAT-HAP3 Transcription Factor Family AT2G13570 78.1 5.9e-41 164.5
HCH1g0524 . 26 120 CCAAT-HAP3 Transcription Factor Family AT2G13570 73.7 4.3e-39 158.3
HCH2g0653 . 1 122 CCAAT-HAP3 Transcription Factor Family AT5G47640 80.2 1.3e-52 203.0
HCH6g0875 . 1 131 CCAAT-HAP3 Transcription Factor Family AT5G47640 74.4 8.9e-49 190.3
HCH11g0246 . 11 122 CCAAT-HAP3 Transcription Factor Family AT5G47640 75.0 3.0e-44 175.3
HCH13g1276 . 20 123 CCAAT-HAP3 Transcription Factor Family AT5G47640 80.8 3.9e-44 174.9
HCH1g0524 . 26 125 CCAAT-HAP3 Transcription Factor Family AT5G47640 78.0 1.1e-41 166.8
HCH4g0997 . 43 139 CCAAT-HAP3 Transcription Factor Family AT5G47640 79.4 3.1e-41 165.2
HCH11g0246 . 12 174 CCAAT-HAP3 Transcription Factor Family AT3G53340 73.7 1.2e-60 229.6
HCH1g0524 . 1 171 CCAAT-HAP3 Transcription Factor Family AT3G53340 65.6 4.2e-53 204.5
HCH2g0653 . 6 125 CCAAT-HAP3 Transcription Factor Family AT3G53340 71.7 4.3e-45 177.9
HCH13g1276 . 13 163 CCAAT-HAP3 Transcription Factor Family AT3G53340 58.8 2.2e-41 165.6
HCH6g0875 . 1 121 CCAAT-HAP3 Transcription Factor Family AT3G53340 65.1 2.9e-41 165.2
HCH4g0997 . 24 137 CCAAT-HAP3 Transcription Factor Family AT3G53340 65.0 1.3e-38 156.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000266 8 6 6 8 9 3 3 3 3 2 3 3 6 4 4 6 3 10 6 3 4 4 4 3 4 3 2 16 9 4 152
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33056 PF00808 CBFD_NFYB_HMF 3.80E-28 CL0012 HCH TF