Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH1g0524 | ATGGCGGAGGCTCCGACGAGTCCAGCCGGAGGAAGCCACGAAAGCGGCGGCGAACGAAGCCCTAATACAGGCCATCGTGAACAAGACCGTTTTCTTCCGATCGCTAATATTAGCCGGATCATGAAAAAGGCTTTACCTGCTAATGGAAAGATCGCTAAGGATGCTAAAGATACCGTTCAGGAATGCGTTTCTGAATTTATTAGCTTTATTACCAGCGAGGCGAGTGATAAGTGCCAAAAGGAAAAAAGGAAGACTATTAATGGTGATGATTTGTTGTGGGCAATGGCAACTTTGGGTTTCGAGGAGTATATTGATCCGCTTAAGTCGTATTTAAGTCGGTACAGAGAGGGTGATGCTAAAGGATCTTCAAGGGGTGGTGATGACTCTGTTAAAAGAGAACCAGTCGGGGTCTTGCCTGGTCAAAATTCTCAGCAGTTCATGCACCAGGGAACAATGGCCTACATTAATGCCCAAGGACAGCATATGATCATTCCATCAATGCCAAATAATGAATAG | 516 | 45.54 | MAEAPTSPAGGSHESGGERSPNTGHREQDRFLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEEYIDPLKSYLSRYREGDAKGSSRGGDDSVKREPVGVLPGQNSQQFMHQGTMAYINAQGQHMIIPSMPNNE | 171 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 54154334 | 54157672 | + | evm.model.ptg000006l.801 | HCH1g0524 | 538543 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH1g0524 | 171 | ProSitePatterns | NF-YB/HAP3 subunit signature. | 62 | 78 | IPR003956 | GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
HCH1g0524 | 171 | Gene3D | Histone, subunit A | 19 | 151 | IPR009072 | GO:0046982(InterPro) | |
HCH1g0524 | 171 | MobiDBLite | consensus disorder prediction | 117 | 143 | - | - | |
HCH1g0524 | 171 | SUPERFAMILY | Histone-fold | 28 | 125 | IPR009072 | GO:0046982(InterPro) | |
HCH1g0524 | 171 | MobiDBLite | consensus disorder prediction | 117 | 131 | - | - | |
HCH1g0524 | 171 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 31 | 95 | IPR003958 | - | |
HCH1g0524 | 171 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - | |
HCH1g0524 | 171 | FunFam | Nuclear transcription factor Y subunit B-3 | 20 | 146 | - | - | |
HCH1g0524 | 171 | PRINTS | CCAAT-binding transcription factor subunit A signature | 59 | 77 | - | - | |
HCH1g0524 | 171 | PRINTS | CCAAT-binding transcription factor subunit A signature | 97 | 115 | - | - | |
HCH1g0524 | 171 | PRINTS | CCAAT-binding transcription factor subunit A signature | 78 | 96 | - | - | |
HCH1g0524 | 171 | PANTHER | CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED | 18 | 143 | IPR027113 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(InterPro)|GO:0016602(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH1g0524 | HCH-Chr1:54154334 | HCH2g0653 | HCH-Chr2:50302037 | 3.50E-44 | dispersed | |
HCH1g0524 | HCH-Chr1:54154334 | HCH11g0246 | HCH-Chr11:2228074 | 6.30E-62 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
33056 | PF00808 | CBFD_NFYB_HMF | 3.80E-28 | CL0012 | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH1g0524 | K08065 | - | csv:101223123 | 293.893 |