Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0524 ATGGCGGAGGCTCCGACGAGTCCAGCCGGAGGAAGCCACGAAAGCGGCGGCGAACGAAGCCCTAATACAGGCCATCGTGAACAAGACCGTTTTCTTCCGATCGCTAATATTAGCCGGATCATGAAAAAGGCTTTACCTGCTAATGGAAAGATCGCTAAGGATGCTAAAGATACCGTTCAGGAATGCGTTTCTGAATTTATTAGCTTTATTACCAGCGAGGCGAGTGATAAGTGCCAAAAGGAAAAAAGGAAGACTATTAATGGTGATGATTTGTTGTGGGCAATGGCAACTTTGGGTTTCGAGGAGTATATTGATCCGCTTAAGTCGTATTTAAGTCGGTACAGAGAGGGTGATGCTAAAGGATCTTCAAGGGGTGGTGATGACTCTGTTAAAAGAGAACCAGTCGGGGTCTTGCCTGGTCAAAATTCTCAGCAGTTCATGCACCAGGGAACAATGGCCTACATTAATGCCCAAGGACAGCATATGATCATTCCATCAATGCCAAATAATGAATAG 516 45.54 MAEAPTSPAGGSHESGGERSPNTGHREQDRFLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEEYIDPLKSYLSRYREGDAKGSSRGGDDSVKREPVGVLPGQNSQQFMHQGTMAYINAQGQHMIIPSMPNNE 171
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 54154334 54157672 + evm.model.ptg000006l.801 HCH1g0524 538543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0524 171 ProSitePatterns NF-YB/HAP3 subunit signature. 62 78 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH1g0524 171 Gene3D Histone, subunit A 19 151 IPR009072 GO:0046982(InterPro)
HCH1g0524 171 MobiDBLite consensus disorder prediction 117 143 - -
HCH1g0524 171 SUPERFAMILY Histone-fold 28 125 IPR009072 GO:0046982(InterPro)
HCH1g0524 171 MobiDBLite consensus disorder prediction 117 131 - -
HCH1g0524 171 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 31 95 IPR003958 -
HCH1g0524 171 MobiDBLite consensus disorder prediction 1 29 - -
HCH1g0524 171 FunFam Nuclear transcription factor Y subunit B-3 20 146 - -
HCH1g0524 171 PRINTS CCAAT-binding transcription factor subunit A signature 59 77 - -
HCH1g0524 171 PRINTS CCAAT-binding transcription factor subunit A signature 97 115 - -
HCH1g0524 171 PRINTS CCAAT-binding transcription factor subunit A signature 78 96 - -
HCH1g0524 171 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 18 143 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(InterPro)|GO:0016602(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0524 HCH-Chr1:54154334 HCH2g0653 HCH-Chr2:50302037 3.50E-44 dispersed
HCH1g0524 HCH-Chr1:54154334 HCH11g0246 HCH-Chr11:2228074 6.30E-62 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33056 PF00808 CBFD_NFYB_HMF 3.80E-28 CL0012 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0524 K08065 - csv:101223123 293.893