Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0528 ATGGATTACGTAGCTAAATGTACGAAAACACCACCAAAACCTATCACTGTTCCAAACCCATTATCAACATATTCTCCATCTTCTTCTTCCGGATCTCCTCCTTTGAGTAACAATTCTGCTGTTGTTTCGCCGCCGCATTCTCCGCCGCACCCGGTTGTTCTCAGCCCTTGCGCCGCCTGTAAGATCCTCCGGCGTCGGTGCGTGGAAAAATGTGTTTTGGCTCCTTATTTTCCTCCCACTGAGCCTCTCAAATTCACCATTGCTCATCGAGTCTTTGGAGCTAGCAATATCATCAAGTTCTTGCAAGAGCTCCCAGAATCACAGAGAACAGATGCAGTGAGCAGCATGGTGTATGAGGCGAATGCACGGCTGCGAGACCCGGTCTACGGCAGCGCAGGCGCCATATGCCAGCTCCAGACGCAAGTCAGTGAGCTCCAAGCTCAACTCGCCAAGGCTCGAGCAGAAGTAGCCAACATGCAACACCAGCAAGCCAATTTGTTGGCCTTAATCTGCATGGAAATGCGACAATCATCATCGTCGTCGTCGTTATCGCTATCATCACTGACATCGTCATCGTCTCAGCTCGAACCCATTTTGAGTTTCCAGCCACATCATGAGCTTCCCTTGATCGATACCAGCTGCTTTCTGGATGATGCCAGCTTGAGCTCCCCATGGGAACCCCTCTGGACATGA 693 50.79 MDYVAKCTKTPPKPITVPNPLSTYSPSSSSGSPPLSNNSAVVSPPHSPPHPVVLSPCAACKILRRRCVEKCVLAPYFPPTEPLKFTIAHRVFGASNIIKFLQELPESQRTDAVSSMVYEANARLRDPVYGSAGAICQLQTQVSELQAQLAKARAEVANMQHQQANLLALICMEMRQSSSSSSLSLSSLTSSSSQLEPILSFQPHHELPLIDTSCFLDDASLSSPWEPLWT 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 54215123 54216626 + evm.model.ptg000006l.797 HCH1g0528 538547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0528 230 Pfam Lateral organ boundaries (LOB) domain 56 153 IPR004883 -
HCH1g0528 230 MobiDBLite consensus disorder prediction 20 43 - -
HCH1g0528 230 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 55 180 - -
HCH1g0528 230 MobiDBLite consensus disorder prediction 1 45 - -
HCH1g0528 230 Coils Coil 135 169 - -
HCH1g0528 230 ProSiteProfiles LOB domain profile. 55 156 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0528 HCH-Chr1:54215123 HCH3g1271 HCH-Chr3:48172352 3.00E-51 dispersed
HCH1g0528 HCH-Chr1:54215123 HCH13g0420 HCH-Chr13:2909082 2.70E-47 wgd
HCH1g0528 HCH-Chr1:54215123 HCH2g1152 HCH-Chr2:54160016 1.80E-48 wgd
HCH1g0528 HCH-Chr1:54215123 HCH3g1270 HCH-Chr3:48096045 3.10E-48 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33057 PF03195 LOB 3.90E-40 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0528 - - - 0.0