Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0544 ATGTCAAATTCAGAACCCACTAATAACGGCGCCCCGCCACAGCCACCGCCGTCAACAAACGGCGCATTAGTCATTAAAAAACCGCCTTCCAAAGACCGACACAGCAAAGTCGACGGCCGTGGCCGCCGCATCCGAATGCCCATCATCTGCGCCGCACGTGTCTTCCAACTCACACGTGAATTGGGTCATAAGTCCGACGGCCAAACCATCGAATGGCTTCTCCGTCAAGCCGAACCTTCCATTATCGCTGCCACCGGTACCGGAACTACTCCCGCTAATTTCTCCTCCGTCGTCTCCGTCTCCCGCTCTTCTCCTTCTTCCACTATTTCTTCTCTATCTCTCTCCCGTCCATTACCTGGGCCCACTCCGTTTATCCTCGGGAAACGCGTGAGAACCGATGATGATGACGACGGCGGCGGCGGAGGAGGAGGAGGTAAGGATGATGGGTTAGGTGTGGGTCCTGTGCTGGGACCGGGTGGGTATTGGGCGATTCCGGCACGCCCTGATTACGGGCAAGTTTGGAGCTTTGCGGCGGCGGCGGCTCCTGAGATGGTGGTTTCTCAGCAAGGTGGGTTGTTCGGACAGCCGTCAACGCAGATGAGAGAGGCTGCGGCGGCGGCGGCGGGGAGAGTGGGGAATTATATTCCGGGGCATTTGAATTTGTTGGCTTCTTTATCGAGTGGAAATTCTGGAAGGAGAGAAGACGATGCTCGTTGA 717 56.76 MSNSEPTNNGAPPQPPPSTNGALVIKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPANFSSVVSVSRSSPSSTISSLSLSRPLPGPTPFILGKRVRTDDDDDGGGGGGGGKDDGLGVGPVLGPGGYWAIPARPDYGQVWSFAAAAAPEMVVSQQGGLFGQPSTQMREAAAAAAGRVGNYIPGHLNLLASLSSGNSGRREDDAR 238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 54405412 54406128 + evm.model.ptg000006l.781 HCH1g0544 538563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0544 238 MobiDBLite consensus disorder prediction 128 142 - -
HCH1g0544 238 MobiDBLite consensus disorder prediction 27 42 - -
HCH1g0544 238 MobiDBLite consensus disorder prediction 1 42 - -
HCH1g0544 238 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 18 136 IPR005333 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
HCH1g0544 238 ProSiteProfiles TCP domain profile. 30 84 IPR017887 -
HCH1g0544 238 MobiDBLite consensus disorder prediction 123 152 - -
HCH1g0544 238 Pfam TCP family transcription factor 30 111 IPR017887 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0544 HCH-Chr1:54405412 HCH8g1306 HCH-Chr8:48103877 1.50E-29 dispersed
HCH1g0544 HCH-Chr1:54405412 HCH10g1153 HCH-Chr10:41139047 1.20E-58 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33059 PF03634 TCP 1.20E-32 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0544 K16221 - csv:101206050 270.011