Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0544 ATGTCAAATTCAGAACCCACTAATAACGGCGCCCCGCCACAGCCACCGCCGTCAACAAACGGCGCATTAGTCATTAAAAAACCGCCTTCCAAAGACCGACACAGCAAAGTCGACGGCCGTGGCCGCCGCATCCGAATGCCCATCATCTGCGCCGCACGTGTCTTCCAACTCACACGTGAATTGGGTCATAAGTCCGACGGCCAAACCATCGAATGGCTTCTCCGTCAAGCCGAACCTTCCATTATCGCTGCCACCGGTACCGGAACTACTCCCGCTAATTTCTCCTCCGTCGTCTCCGTCTCCCGCTCTTCTCCTTCTTCCACTATTTCTTCTCTATCTCTCTCCCGTCCATTACCTGGGCCCACTCCGTTTATCCTCGGGAAACGCGTGAGAACCGATGATGATGACGACGGCGGCGGCGGAGGAGGAGGAGGTAAGGATGATGGGTTAGGTGTGGGTCCTGTGCTGGGACCGGGTGGGTATTGGGCGATTCCGGCACGCCCTGATTACGGGCAAGTTTGGAGCTTTGCGGCGGCGGCGGCTCCTGAGATGGTGGTTTCTCAGCAAGGTGGGTTGTTCGGACAGCCGTCAACGCAGATGAGAGAGGCTGCGGCGGCGGCGGCGGGGAGAGTGGGGAATTATATTCCGGGGCATTTGAATTTGTTGGCTTCTTTATCGAGTGGAAATTCTGGAAGGAGAGAAGACGATGCTCGTTGA 717 56.76 MSNSEPTNNGAPPQPPPSTNGALVIKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPANFSSVVSVSRSSPSSTISSLSLSRPLPGPTPFILGKRVRTDDDDDGGGGGGGGKDDGLGVGPVLGPGGYWAIPARPDYGQVWSFAAAAAPEMVVSQQGGLFGQPSTQMREAAAAAAGRVGNYIPGHLNLLASLSSGNSGRREDDAR 238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 54405412 54406128 + evm.model.ptg000006l.781 HCH1g0544 538563

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0544 238 MobiDBLite consensus disorder prediction 128 142 - -
HCH1g0544 238 MobiDBLite consensus disorder prediction 27 42 - -
HCH1g0544 238 MobiDBLite consensus disorder prediction 1 42 - -
HCH1g0544 238 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 18 136 IPR005333 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
HCH1g0544 238 ProSiteProfiles TCP domain profile. 30 84 IPR017887 -
HCH1g0544 238 MobiDBLite consensus disorder prediction 123 152 - -
HCH1g0544 238 Pfam TCP family transcription factor 30 111 IPR017887 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0544 K16221 - - csv:101206050 270.011
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0544 HCH-Chr1:54405412 HCH8g1306 HCH-Chr8:48103877 1.50E-29 dispersed
HCH1g0544 HCH-Chr1:54405412 HCH10g1153 HCH-Chr10:41139047 1.20E-58 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH1g0544 . 28 238 TCP Transcription Factor Family AT5G23280 57.8 2.0e-56 216.1
HCH10g1153 . 22 252 TCP Transcription Factor Family AT5G23280 54.5 2.4e-54 209.1
HCH13g1174 . 64 332 TCP Transcription Factor Family AT2G45680 55.0 3.5e-62 235.7
HCH1g0935 . 76 180 TCP Transcription Factor Family AT3G47620 85.0 1.9e-42 170.6
HCH3g0046 . 52 161 TCP Transcription Factor Family AT3G47620 79.3 1.9e-39 160.6
HCH1g1177 . 127 209 TCP Transcription Factor Family AT3G47620 89.2 2.6e-36 150.2
HCH9g0048 . 1 307 TCP Transcription Factor Family AT3G27010 56.5 1.9e-67 253.1
HCH1g0544 . 25 236 TCP Transcription Factor Family AT5G08330 60.9 3.3e-56 215.3
HCH10g1153 . 1 251 TCP Transcription Factor Family AT5G08330 51.9 2.1e-55 212.6
HCH8g1238 . 33 227 TCP Transcription Factor Family AT5G60970 51.3 2.5e-44 176.4
HCH9g0307 . 31 131 TCP Transcription Factor Family AT3G02150 75.7 2.0e-38 156.8
HCH6g0648 . 21 224 TCP Transcription Factor Family AT2G31070 51.4 1.7e-40 163.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001822 4 2 1 2 2 2 4 2 2 1 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 3 2 1 68
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33059 PF03634 TCP 1.20E-32 No_clan HCH TF