Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0546 ATGTCTCGGAAATCACATGTGATGCCTTTGTTGCAGTCCACTAAATCATTGCCGGTTAATTCTCGGTTCATGATTCCACCACCAACTTCAGAATCTTTGGAAGAGGCTTGCAATGTGAATTCAAGAAACATGGAAGCTAGTTCGTCAGTTGTTGGTGAAAATGGTGTTTTTAGGGACGATGGAATTGATAGAGTTCATTACGGTATGAACAATGTTGATGAGGTTAATGACGACTCACCGTATAATTTTGATACCCAAACAATTGAAGACAGACCCGCCATGGATGATGGAGAAGATGGTTTTATGCCTTTGCCTTCACCTTCGGTATCCGCTTCACATAGTGAACGCAGGTGGGGTGACACATCCTCCTACACGCCAAGGAAGATACTTCAATCCTGGTTTAAACTTCCGAATGGGAATTGGGAACTTGTACAGATATTGTCAACTACAGGAGCAGAGTCAGTAGTTTCACTGTCTGATGGAAAGGTGTTAAAGGTGAAAGCTGAAAGTTTGGTCCCTGCAAATCCCAATATCCTTGATGGTGTCGATGATCTTATGCAACTAAGCTATTTAAACGAGCCTTCAGTATTATATGATCTTCAGTACAGATATAATCAAGACATTATATATACAAAAGCAGGGCCAGTTCTGGTTGCTATCAACCCCTTCAAGAAAGTTGATTTGTATGGAAACGATTACATTGAATCATACAAGCGTAAAACAATCGAAAGTCCACATGTTTATGCCATTACAGATACAGCCATAAAGGAGATGATTCGAGATGAAGTAAATCAGTCAATTATAATAAGTGGTGAAAGTGGAGCTGGAAAAACTGAAACAGCTAAGATAGCTATGCAATATTTAGCTGCCCTTGGTGGTGGAAGTGGAATAGAAAATGAGATATTGAAGACCAATCCTATCCTTGAAGCTTTTGGAAATGCAAAAACATTGAGAAATGATAACTCAAGCCGTTTTGGAAAATTGATTGAAATCCATTTTAGTGAAACTGGGAAAATATCTGGTGCAAACATTCAAACTTTTTTACTTGAAAAGTCTAGAGTTGTCCAATGCATGGAGGGAGAGAGGTCATACCACATCTTTTATCAACTTTGTAGTGGTGCTCCGCCTGCTCTTAAAGAGAGGCTAAACTTGAAAAGTGCAGAAGAGTACAAATATCTCAGCCAGAGCAATTGTTTTACAATAACTAGGGTTAATGATGTTGAAGAATTTCGTATAGTCATGGATGCATTAGATGTTGTCCATATCAGCAAAGAAGATCAGCATAGTGTATTTGCAATGCTTGCTGCTGTGCTATGGCTTGGAAATATTTCCTTTAGTATGATAGACAATGAGAATCATGTGGAGGCTGTGGAAGATGAAGGTTTAACAACTGTTGCTAAACTGATTGAATGTGAGGTTGAGGAGCTTAAACTAGCCTTATCAACTCGAAAAATGAGAGTTGGAAATGACAGCATTGTTCAAAAGCTTACATTGTCTCAGGCAATTGACACAAGAGATGCTTTGGCAAAGTCAATTTATGCTAGTTTGTTCGAGTGGCTGGTTGAACAAATTAACAAATCTCTTTCTGTGGGCAAGCGACGTACTGGAAGATCCATCAGCATTCTCGATATTTATGGCTTTGAATCATTTGATAGGAATAGTTTTGAACAGTTCTGCATTAACTATGCAAATGAGAGACTGCAGCAGCATTTCAATCGGCATTTGTTTAAGCTAGAGCAGGAGGAATATATTCAAGATGGCATCGACTGGGCAAAAGTTGATTTTGATGACAACCAAGATTGTCTAAGTCTTTTTGAAAAGAAACCTTTGGGATTGTTGTCCCTGTTAGATGAGGAGTCCACTTTTCCAAATGGCACAGATCTGACCTTTGCAAACAAGCTTAAGCAGCATTTGAGCCCTAATTCTTCTTTTAGAGGAGAACGAGGGAAAGCCTTCACTATTTGTCATTATGCAGGAGAGGTCACATATGACACAACTGGTTTTCTGGAGAAAAATAGGGATTTACTGCACTTAGATTCTATTCAACTCCTATCATCATGCTCGTGCCATCTCCCTCAGATTTTTGCATCAAACATGCTAAATCAATCGGAAAAGCCTGTAGTTGGTTCTTTACATAAGTCTGGCGGTGCAGAATCCCAAAAACTAAGTGTTGCTAGAAAATTTAAGGGTCAATTGTTCCAATTGATGCACCGTCTTGAAACTACGACACCTCATTTCATACGTTGTATCAAGCCAAACAACCTTCAGTCTCCCAGATTGTATGATCAAGGACTTGTAGTACAACAGTTGAGATGTTGTGGGGTTCTAGAAGTGGTTAGGATATCACGAGCTGGTTTTCCAACCCGGATGTCACATCAGAAATTTGCTCGAAGGTATGGTTTCCTTCTACAAGAAAGTGTTGCCTCTCAGGATCCTCTGAGTGTCTCAGTTGCAATTCTTCATCAATTCGATATATTGCCTGAAATGTACCAAGTTGGCTATACAAAATTGTTTTTCCGAACTGGACAGATTGGAGTGCTTGAAGATACAAGAAACCGCACCCTCCATGGAATTTTATGTGTTCAAAGCTGTTTTAGAGGGCATCTAGCTCGATGCCACTTTAAAGAGCTGAGAAGAGGGATCTCCACTCTTCAGTCATTTGTACGTGGAGAGAAAGCTAGAAAAGAATATTCAGTCTTGGTACAAAAGCATAGGGCTGCCATATCTATTCAAAAGTGTGTGAAAGCTCGAATAGCCAGAAAACGTTTGCAGAAAGTATGTGATGCATCACTTCTGATACAAGCAGTTATCCGCGGCTGGTTGGTCAGAAGATGCTCAGGCGACATAGGATTACTGAACTCTGGTGGCCTGAAGGCAAATGAATCAGGTGAAGTGCTTGTCAAGTCATCTTATCTTGCAGAATTACAACGCCGTGTTCTCAGGGCGGAGGCTGGTTTGAGAGAGAAAGAAGAGGAGAATGACATCCTCCATCAACGTCTACAACAGTACGAGAACCGTTGGTCAGAGTATGAGCTGAAAATGAAGTCAATGGAAGAGGTGTGGCAGAAACAAATGAGATCCCTACAGTCTAGCCTCTCTATAGCAAAGAAAAGCTTAGCAGTTGATGATTCAGAGAGAAATTCTGACGCATCGGTCAATGCAAGTGATGAAAGAGGATACAGTTGGGAAGTGGGAAGCAACAATACAGCTAATGACAGCAATGGAGTGAGACCGATGAGTGCAGGGCTCAGTGTTATTAGCCGTTTGGCCGAGGAATTCGAACAAAGAAGTCAAGTGTTCGGCGACGATGCAAAGTTCTTAGTAGAGGTGAAATCCGGTCAGGTTGAGGCAAGTCTTGACCCAGATAGGGAACTCAGGAGGTTGAAACAGATGTTTGAAGCATGGAAGAAAGATTACGTGGCAAGGCTGCGTGAAACTAAAGTGATTTTGAATAAGCTCGGGAACGACGGTGCCATGGATAGGGTGAAAAAGAAATGGTGGGGAAGGAGAAACAGCACAAGGTATAGTTAA 3531 40.95 MSRKSHVMPLLQSTKSLPVNSRFMIPPPTSESLEEACNVNSRNMEASSSVVGENGVFRDDGIDRVHYGMNNVDEVNDDSPYNFDTQTIEDRPAMDDGEDGFMPLPSPSVSASHSERRWGDTSSYTPRKILQSWFKLPNGNWELVQILSTTGAESVVSLSDGKVLKVKAESLVPANPNILDGVDDLMQLSYLNEPSVLYDLQYRYNQDIIYTKAGPVLVAINPFKKVDLYGNDYIESYKRKTIESPHVYAITDTAIKEMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGSGIENEILKTNPILEAFGNAKTLRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKSRVVQCMEGERSYHIFYQLCSGAPPALKERLNLKSAEEYKYLSQSNCFTITRVNDVEEFRIVMDALDVVHISKEDQHSVFAMLAAVLWLGNISFSMIDNENHVEAVEDEGLTTVAKLIECEVEELKLALSTRKMRVGNDSIVQKLTLSQAIDTRDALAKSIYASLFEWLVEQINKSLSVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFDDNQDCLSLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLSPNSSFRGERGKAFTICHYAGEVTYDTTGFLEKNRDLLHLDSIQLLSSCSCHLPQIFASNMLNQSEKPVVGSLHKSGGAESQKLSVARKFKGQLFQLMHRLETTTPHFIRCIKPNNLQSPRLYDQGLVVQQLRCCGVLEVVRISRAGFPTRMSHQKFARRYGFLLQESVASQDPLSVSVAILHQFDILPEMYQVGYTKLFFRTGQIGVLEDTRNRTLHGILCVQSCFRGHLARCHFKELRRGISTLQSFVRGEKARKEYSVLVQKHRAAISIQKCVKARIARKRLQKVCDASLLIQAVIRGWLVRRCSGDIGLLNSGGLKANESGEVLVKSSYLAELQRRVLRAEAGLREKEEENDILHQRLQQYENRWSEYELKMKSMEEVWQKQMRSLQSSLSIAKKSLAVDDSERNSDASVNASDERGYSWEVGSNNTANDSNGVRPMSAGLSVISRLAEEFEQRSQVFGDDAKFLVEVKSGQVEASLDPDRELRRLKQMFEAWKKDYVARLRETKVILNKLGNDGAMDRVKKKWWGRRNSTRYS 1176
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 54426403 54439909 + evm.model.ptg000006l.779 HCH1g0546 538565
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0546 1176 Gene3D Kinesin motor domain 179 785 IPR036961 -
HCH1g0546 1176 CDD MYSc_Myo8 194 840 IPR036022 -
HCH1g0546 1176 Gene3D - 786 853 - -
HCH1g0546 1176 Pfam Myosin head (motor domain) 182 840 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
HCH1g0546 1176 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 154 900 IPR027417 -
HCH1g0546 1176 PRINTS Myosin heavy chain signature 264 289 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
HCH1g0546 1176 PRINTS Myosin heavy chain signature 210 229 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
HCH1g0546 1176 PRINTS Myosin heavy chain signature 538 566 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
HCH1g0546 1176 PRINTS Myosin heavy chain signature 306 333 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
HCH1g0546 1176 PRINTS Myosin heavy chain signature 591 619 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
HCH1g0546 1176 Gene3D Myosin VI head, motor domain, U50 subdomain 419 527 - -
HCH1g0546 1176 ProSiteProfiles Myosin motor domain profile. 180 852 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
HCH1g0546 1176 ProSiteProfiles IQ motif profile. 856 883 - -
HCH1g0546 1176 Gene3D - 362 418 - -
HCH1g0546 1176 Gene3D - 550 742 - -
HCH1g0546 1176 ProSiteProfiles IQ motif profile. 903 930 - -
HCH1g0546 1176 FunFam Unconventional myosin-XIX 550 742 - -
HCH1g0546 1176 Coils Coil 972 1020 - -
HCH1g0546 1176 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 127 176 IPR004009 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
HCH1g0546 1176 Pfam IQ calmodulin-binding motif 929 944 IPR000048 GO:0005515(InterPro)
HCH1g0546 1176 Pfam IQ calmodulin-binding motif 858 875 IPR000048 GO:0005515(InterPro)
HCH1g0546 1176 Pfam IQ calmodulin-binding motif 878 897 IPR000048 GO:0005515(InterPro)
HCH1g0546 1176 Gene3D - 905 946 - -
HCH1g0546 1176 Gene3D - 857 904 - -
HCH1g0546 1176 SMART MYSc_2a 174 853 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
HCH1g0546 1176 ProSiteProfiles IQ motif profile. 877 906 - -
HCH1g0546 1176 FunFam Myosin heavy chain 362 418 - -
HCH1g0546 1176 PANTHER MYOSIN 132 1166 - GO:0000146(PANTHER)|GO:0005737(PANTHER)|GO:0007015(PANTHER)|GO:0015629(PANTHER)|GO:0030050(PANTHER)|GO:0031982(PANTHER)|GO:0051015(PANTHER)
HCH1g0546 1176 MobiDBLite consensus disorder prediction 1045 1076 - -
HCH1g0546 1176 MobiDBLite consensus disorder prediction 1060 1076 - -
HCH1g0546 1176 SMART iq_5 876 898 IPR000048 GO:0005515(InterPro)
HCH1g0546 1176 SMART iq_5 902 924 IPR000048 GO:0005515(InterPro)
HCH1g0546 1176 SMART iq_5 853 875 IPR000048 GO:0005515(InterPro)
HCH1g0546 1176 SMART iq_5 925 947 IPR000048 GO:0005515(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g1113 HCH-Chr12:8661373 HCH1g0546 HCH-Chr1:54426403 0.00E+00 dispersed
HCH1g0546 HCH-Chr1:54426403 HCH4g0507 HCH-Chr4:3321214 5.30E-168 dispersed
HCH1g0546 HCH-Chr1:54426403 HCH8g0621 HCH-Chr8:42990089 1.30E-169 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0546 - - - 0.0