Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH1g0546 | ATGTCTCGGAAATCACATGTGATGCCTTTGTTGCAGTCCACTAAATCATTGCCGGTTAATTCTCGGTTCATGATTCCACCACCAACTTCAGAATCTTTGGAAGAGGCTTGCAATGTGAATTCAAGAAACATGGAAGCTAGTTCGTCAGTTGTTGGTGAAAATGGTGTTTTTAGGGACGATGGAATTGATAGAGTTCATTACGGTATGAACAATGTTGATGAGGTTAATGACGACTCACCGTATAATTTTGATACCCAAACAATTGAAGACAGACCCGCCATGGATGATGGAGAAGATGGTTTTATGCCTTTGCCTTCACCTTCGGTATCCGCTTCACATAGTGAACGCAGGTGGGGTGACACATCCTCCTACACGCCAAGGAAGATACTTCAATCCTGGTTTAAACTTCCGAATGGGAATTGGGAACTTGTACAGATATTGTCAACTACAGGAGCAGAGTCAGTAGTTTCACTGTCTGATGGAAAGGTGTTAAAGGTGAAAGCTGAAAGTTTGGTCCCTGCAAATCCCAATATCCTTGATGGTGTCGATGATCTTATGCAACTAAGCTATTTAAACGAGCCTTCAGTATTATATGATCTTCAGTACAGATATAATCAAGACATTATATATACAAAAGCAGGGCCAGTTCTGGTTGCTATCAACCCCTTCAAGAAAGTTGATTTGTATGGAAACGATTACATTGAATCATACAAGCGTAAAACAATCGAAAGTCCACATGTTTATGCCATTACAGATACAGCCATAAAGGAGATGATTCGAGATGAAGTAAATCAGTCAATTATAATAAGTGGTGAAAGTGGAGCTGGAAAAACTGAAACAGCTAAGATAGCTATGCAATATTTAGCTGCCCTTGGTGGTGGAAGTGGAATAGAAAATGAGATATTGAAGACCAATCCTATCCTTGAAGCTTTTGGAAATGCAAAAACATTGAGAAATGATAACTCAAGCCGTTTTGGAAAATTGATTGAAATCCATTTTAGTGAAACTGGGAAAATATCTGGTGCAAACATTCAAACTTTTTTACTTGAAAAGTCTAGAGTTGTCCAATGCATGGAGGGAGAGAGGTCATACCACATCTTTTATCAACTTTGTAGTGGTGCTCCGCCTGCTCTTAAAGAGAGGCTAAACTTGAAAAGTGCAGAAGAGTACAAATATCTCAGCCAGAGCAATTGTTTTACAATAACTAGGGTTAATGATGTTGAAGAATTTCGTATAGTCATGGATGCATTAGATGTTGTCCATATCAGCAAAGAAGATCAGCATAGTGTATTTGCAATGCTTGCTGCTGTGCTATGGCTTGGAAATATTTCCTTTAGTATGATAGACAATGAGAATCATGTGGAGGCTGTGGAAGATGAAGGTTTAACAACTGTTGCTAAACTGATTGAATGTGAGGTTGAGGAGCTTAAACTAGCCTTATCAACTCGAAAAATGAGAGTTGGAAATGACAGCATTGTTCAAAAGCTTACATTGTCTCAGGCAATTGACACAAGAGATGCTTTGGCAAAGTCAATTTATGCTAGTTTGTTCGAGTGGCTGGTTGAACAAATTAACAAATCTCTTTCTGTGGGCAAGCGACGTACTGGAAGATCCATCAGCATTCTCGATATTTATGGCTTTGAATCATTTGATAGGAATAGTTTTGAACAGTTCTGCATTAACTATGCAAATGAGAGACTGCAGCAGCATTTCAATCGGCATTTGTTTAAGCTAGAGCAGGAGGAATATATTCAAGATGGCATCGACTGGGCAAAAGTTGATTTTGATGACAACCAAGATTGTCTAAGTCTTTTTGAAAAGAAACCTTTGGGATTGTTGTCCCTGTTAGATGAGGAGTCCACTTTTCCAAATGGCACAGATCTGACCTTTGCAAACAAGCTTAAGCAGCATTTGAGCCCTAATTCTTCTTTTAGAGGAGAACGAGGGAAAGCCTTCACTATTTGTCATTATGCAGGAGAGGTCACATATGACACAACTGGTTTTCTGGAGAAAAATAGGGATTTACTGCACTTAGATTCTATTCAACTCCTATCATCATGCTCGTGCCATCTCCCTCAGATTTTTGCATCAAACATGCTAAATCAATCGGAAAAGCCTGTAGTTGGTTCTTTACATAAGTCTGGCGGTGCAGAATCCCAAAAACTAAGTGTTGCTAGAAAATTTAAGGGTCAATTGTTCCAATTGATGCACCGTCTTGAAACTACGACACCTCATTTCATACGTTGTATCAAGCCAAACAACCTTCAGTCTCCCAGATTGTATGATCAAGGACTTGTAGTACAACAGTTGAGATGTTGTGGGGTTCTAGAAGTGGTTAGGATATCACGAGCTGGTTTTCCAACCCGGATGTCACATCAGAAATTTGCTCGAAGGTATGGTTTCCTTCTACAAGAAAGTGTTGCCTCTCAGGATCCTCTGAGTGTCTCAGTTGCAATTCTTCATCAATTCGATATATTGCCTGAAATGTACCAAGTTGGCTATACAAAATTGTTTTTCCGAACTGGACAGATTGGAGTGCTTGAAGATACAAGAAACCGCACCCTCCATGGAATTTTATGTGTTCAAAGCTGTTTTAGAGGGCATCTAGCTCGATGCCACTTTAAAGAGCTGAGAAGAGGGATCTCCACTCTTCAGTCATTTGTACGTGGAGAGAAAGCTAGAAAAGAATATTCAGTCTTGGTACAAAAGCATAGGGCTGCCATATCTATTCAAAAGTGTGTGAAAGCTCGAATAGCCAGAAAACGTTTGCAGAAAGTATGTGATGCATCACTTCTGATACAAGCAGTTATCCGCGGCTGGTTGGTCAGAAGATGCTCAGGCGACATAGGATTACTGAACTCTGGTGGCCTGAAGGCAAATGAATCAGGTGAAGTGCTTGTCAAGTCATCTTATCTTGCAGAATTACAACGCCGTGTTCTCAGGGCGGAGGCTGGTTTGAGAGAGAAAGAAGAGGAGAATGACATCCTCCATCAACGTCTACAACAGTACGAGAACCGTTGGTCAGAGTATGAGCTGAAAATGAAGTCAATGGAAGAGGTGTGGCAGAAACAAATGAGATCCCTACAGTCTAGCCTCTCTATAGCAAAGAAAAGCTTAGCAGTTGATGATTCAGAGAGAAATTCTGACGCATCGGTCAATGCAAGTGATGAAAGAGGATACAGTTGGGAAGTGGGAAGCAACAATACAGCTAATGACAGCAATGGAGTGAGACCGATGAGTGCAGGGCTCAGTGTTATTAGCCGTTTGGCCGAGGAATTCGAACAAAGAAGTCAAGTGTTCGGCGACGATGCAAAGTTCTTAGTAGAGGTGAAATCCGGTCAGGTTGAGGCAAGTCTTGACCCAGATAGGGAACTCAGGAGGTTGAAACAGATGTTTGAAGCATGGAAGAAAGATTACGTGGCAAGGCTGCGTGAAACTAAAGTGATTTTGAATAAGCTCGGGAACGACGGTGCCATGGATAGGGTGAAAAAGAAATGGTGGGGAAGGAGAAACAGCACAAGGTATAGTTAA | 3531 | 40.95 | MSRKSHVMPLLQSTKSLPVNSRFMIPPPTSESLEEACNVNSRNMEASSSVVGENGVFRDDGIDRVHYGMNNVDEVNDDSPYNFDTQTIEDRPAMDDGEDGFMPLPSPSVSASHSERRWGDTSSYTPRKILQSWFKLPNGNWELVQILSTTGAESVVSLSDGKVLKVKAESLVPANPNILDGVDDLMQLSYLNEPSVLYDLQYRYNQDIIYTKAGPVLVAINPFKKVDLYGNDYIESYKRKTIESPHVYAITDTAIKEMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGSGIENEILKTNPILEAFGNAKTLRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKSRVVQCMEGERSYHIFYQLCSGAPPALKERLNLKSAEEYKYLSQSNCFTITRVNDVEEFRIVMDALDVVHISKEDQHSVFAMLAAVLWLGNISFSMIDNENHVEAVEDEGLTTVAKLIECEVEELKLALSTRKMRVGNDSIVQKLTLSQAIDTRDALAKSIYASLFEWLVEQINKSLSVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFDDNQDCLSLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLSPNSSFRGERGKAFTICHYAGEVTYDTTGFLEKNRDLLHLDSIQLLSSCSCHLPQIFASNMLNQSEKPVVGSLHKSGGAESQKLSVARKFKGQLFQLMHRLETTTPHFIRCIKPNNLQSPRLYDQGLVVQQLRCCGVLEVVRISRAGFPTRMSHQKFARRYGFLLQESVASQDPLSVSVAILHQFDILPEMYQVGYTKLFFRTGQIGVLEDTRNRTLHGILCVQSCFRGHLARCHFKELRRGISTLQSFVRGEKARKEYSVLVQKHRAAISIQKCVKARIARKRLQKVCDASLLIQAVIRGWLVRRCSGDIGLLNSGGLKANESGEVLVKSSYLAELQRRVLRAEAGLREKEEENDILHQRLQQYENRWSEYELKMKSMEEVWQKQMRSLQSSLSIAKKSLAVDDSERNSDASVNASDERGYSWEVGSNNTANDSNGVRPMSAGLSVISRLAEEFEQRSQVFGDDAKFLVEVKSGQVEASLDPDRELRRLKQMFEAWKKDYVARLRETKVILNKLGNDGAMDRVKKKWWGRRNSTRYS | 1176 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 54426403 | 54439909 | + | evm.model.ptg000006l.779 | HCH1g0546 | 538565 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH1g0546 | 1176 | Gene3D | Kinesin motor domain | 179 | 785 | IPR036961 | - | |
| HCH1g0546 | 1176 | CDD | MYSc_Myo8 | 194 | 840 | IPR036022 | - | |
| HCH1g0546 | 1176 | Gene3D | - | 786 | 853 | - | - | |
| HCH1g0546 | 1176 | Pfam | Myosin head (motor domain) | 182 | 840 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| HCH1g0546 | 1176 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 154 | 900 | IPR027417 | - | |
| HCH1g0546 | 1176 | PRINTS | Myosin heavy chain signature | 264 | 289 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| HCH1g0546 | 1176 | PRINTS | Myosin heavy chain signature | 210 | 229 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| HCH1g0546 | 1176 | PRINTS | Myosin heavy chain signature | 538 | 566 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| HCH1g0546 | 1176 | PRINTS | Myosin heavy chain signature | 306 | 333 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| HCH1g0546 | 1176 | PRINTS | Myosin heavy chain signature | 591 | 619 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| HCH1g0546 | 1176 | Gene3D | Myosin VI head, motor domain, U50 subdomain | 419 | 527 | - | - | |
| HCH1g0546 | 1176 | ProSiteProfiles | Myosin motor domain profile. | 180 | 852 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| HCH1g0546 | 1176 | ProSiteProfiles | IQ motif profile. | 856 | 883 | - | - | |
| HCH1g0546 | 1176 | Gene3D | - | 362 | 418 | - | - | |
| HCH1g0546 | 1176 | Gene3D | - | 550 | 742 | - | - | |
| HCH1g0546 | 1176 | ProSiteProfiles | IQ motif profile. | 903 | 930 | - | - | |
| HCH1g0546 | 1176 | FunFam | Unconventional myosin-XIX | 550 | 742 | - | - | |
| HCH1g0546 | 1176 | Coils | Coil | 972 | 1020 | - | - | |
| HCH1g0546 | 1176 | ProSiteProfiles | Myosin N-terminal SH3-like domain profile. | 127 | 176 | IPR004009 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| HCH1g0546 | 1176 | Pfam | IQ calmodulin-binding motif | 929 | 944 | IPR000048 | GO:0005515(InterPro) | |
| HCH1g0546 | 1176 | Pfam | IQ calmodulin-binding motif | 858 | 875 | IPR000048 | GO:0005515(InterPro) | |
| HCH1g0546 | 1176 | Pfam | IQ calmodulin-binding motif | 878 | 897 | IPR000048 | GO:0005515(InterPro) | |
| HCH1g0546 | 1176 | Gene3D | - | 905 | 946 | - | - | |
| HCH1g0546 | 1176 | Gene3D | - | 857 | 904 | - | - | |
| HCH1g0546 | 1176 | SMART | MYSc_2a | 174 | 853 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| HCH1g0546 | 1176 | ProSiteProfiles | IQ motif profile. | 877 | 906 | - | - | |
| HCH1g0546 | 1176 | FunFam | Myosin heavy chain | 362 | 418 | - | - | |
| HCH1g0546 | 1176 | PANTHER | MYOSIN | 132 | 1166 | - | GO:0000146(PANTHER)|GO:0005737(PANTHER)|GO:0007015(PANTHER)|GO:0015629(PANTHER)|GO:0030050(PANTHER)|GO:0031982(PANTHER)|GO:0051015(PANTHER) | |
| HCH1g0546 | 1176 | MobiDBLite | consensus disorder prediction | 1045 | 1076 | - | - | |
| HCH1g0546 | 1176 | MobiDBLite | consensus disorder prediction | 1060 | 1076 | - | - | |
| HCH1g0546 | 1176 | SMART | iq_5 | 876 | 898 | IPR000048 | GO:0005515(InterPro) | |
| HCH1g0546 | 1176 | SMART | iq_5 | 902 | 924 | IPR000048 | GO:0005515(InterPro) | |
| HCH1g0546 | 1176 | SMART | iq_5 | 853 | 875 | IPR000048 | GO:0005515(InterPro) | |
| HCH1g0546 | 1176 | SMART | iq_5 | 925 | 947 | IPR000048 | GO:0005515(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH12g1113 | HCH-Chr12:8661373 | HCH1g0546 | HCH-Chr1:54426403 | 0.00E+00 | dispersed | |
| HCH1g0546 | HCH-Chr1:54426403 | HCH4g0507 | HCH-Chr4:3321214 | 5.30E-168 | dispersed | |
| HCH1g0546 | HCH-Chr1:54426403 | HCH8g0621 | HCH-Chr8:42990089 | 1.30E-169 | transposed |
Pathway information