Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0562 ATGCCAAGCAAAAACTGTTGGAACTTTAGTGACAGTTGCTGGAGCAAGCTGACGACTTTATACAAAGGCCCACTTATTGAGATGGCTTGGTCTAAGCATTCACACACTCATCACAATTCCAATGCTCCAACTGATACTTCTGACGAAGATTGGTTTAAGGGATCTGTCTTCCTTATCATTGCCACTTTTGCTTGGGCTTCTCGTTTTGTTTTACAGGCTGTTGCTGTGACATTAGTGGCTGAACTCAAACCTTCTGTCTGGAGAATTGGTTGGGATATGAATCTTCTTGCTGCTGCCTATGCTGGAATTGTGACATCAAGTCTTTCATACTATGTCCAAGGGCTGATGATGAAGATGAGGGGACCTGTCTTTGCAACTGCTTTTAGCCCGTTGATGATGATTACTGTTGCTATCATGGGCTCTTTTATCCTTTCAGAAAAAATCTTTCTAATTACTCCAAACTTATACGGGAGAATATATTTTTAA 486 40.95 MPSKNCWNFSDSCWSKLTTLYKGPLIEMAWSKHSHTHHNSNAPTDTSDEDWFKGSVFLIIATFAWASRFVLQAVAVTLVAELKPSVWRIGWDMNLLAAAYAGIVTSSLSYYVQGLMMKMRGPVFATAFSPLMMITVAIMGSFILSEKIFLITPNLYGRIYF 161
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 54561738 54562778 + evm.model.ptg000006l.763 HCH1g0562 538581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0562 161 PANTHER WAT1-RELATED PROTEIN 71 150 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0562 HCH-Chr1:54561738 HCH1g0598 HCH-Chr1:54870536 1.40E-58 dispersed
HCH1g0562 HCH-Chr1:54561738 HCH9g0645 HCH-Chr9:4288877 2.00E-25 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0562 - - - 0.0