Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH1g0595 | ATGAGGAAGAAGCTCGATACTCGATTTCCTGCTGCTCGAATAAAAAAGATAATGCAAGCAGATGAAGATGTTGGGAAGATAGCCCTAGCAGTGCCTGTTTTAGTCTCTAAAGCGTTGGAACTATTTCTGCAAGACCTCTGTGACCGTACATATGAGATAACTCTGCAAAGAGGAGCAAAGACAATGAATTCATTGCACTTAAAGCACTGCGTTCAAAGCTATAGTGTTTTTGATTTTCTGAGGGATATTGTTAGTAAGGTTCCGGATTACGGTCATGGTCATTCGGATGGTGCTGTTGATGATAGAAAGAGGAGGAAACCCATTGGTGACGATGGCAATGACATTGATGAGTTGAAGAAGAGCAAAATGCATGACGTGAGCCATGGAAGCAGTGGTAGAGGAAGAGGAAGAGGACGAGGACGTGGTCGTGGACGACCTGCTCGATCAGCTGAAAGGGACAACTTCCAACCTCACATGGAATCAGATCCTTGCACATCTCTAGAGAACAGGAATAAGAACCCCAACCCAGATGTGCACATGGAGCATGGTAGTGAGCCTAGTGAAACATTAAAAGAAAGTGGTGATGCCAATCAAGCTGTTCAAAATTTCGATCTTAATGCTGATGTCAATACAAATGAAGACTCCAAGACTGCAGCAGCAGCAGCAGCAGTGTCAGACATGCCCGTCCCATCAGCGGGGCCCAGTATCGAGACTAAAACTGACGAGCTTGCTGCCTGGCCGCTTTCTGACGTGGACAAAATGTCAATTGACCCTCTTCAATATGCTGCACACCTGAGTACAAGGATAGACGAGGAAGATGAAGATTATGATGAGGAAGAGTAA | 843 | 45.31 | MRKKLDTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQSYSVFDFLRDIVSKVPDYGHGHSDGAVDDRKRRKPIGDDGNDIDELKKSKMHDVSHGSSGRGRGRGRGRGRGRPARSAERDNFQPHMESDPCTSLENRNKNPNPDVHMEHGSEPSETLKESGDANQAVQNFDLNADVNTNEDSKTAAAAAAVSDMPVPSAGPSIETKTDELAAWPLSDVDKMSIDPLQYAAHLSTRIDEEDEDYDEEE | 280 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 54854510 | 54857637 | + | evm.model.ptg000006l.730 | HCH1g0595 | 538614 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH1g0595 | 280 | Gene3D | Histone, subunit A | 1 | 86 | IPR009072 | GO:0046982(InterPro) | |
HCH1g0595 | 280 | MobiDBLite | consensus disorder prediction | 174 | 189 | - | - | |
HCH1g0595 | 280 | PANTHER | HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED | 4 | 169 | IPR050568 | GO:0001046(PANTHER)|GO:0005634(PANTHER)|GO:0016251(PANTHER) | |
HCH1g0595 | 280 | MobiDBLite | consensus disorder prediction | 159 | 173 | - | - | |
HCH1g0595 | 280 | FunFam | dr1-associated corepressor homolog | 1 | 86 | - | - | |
HCH1g0595 | 280 | SUPERFAMILY | Histone-fold | 4 | 89 | IPR009072 | GO:0046982(InterPro) | |
HCH1g0595 | 280 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 8 | 71 | IPR003958 | - | |
HCH1g0595 | 280 | MobiDBLite | consensus disorder prediction | 90 | 132 | - | - | |
HCH1g0595 | 280 | MobiDBLite | consensus disorder prediction | 90 | 196 | - | - | |
HCH1g0595 | 280 | MobiDBLite | consensus disorder prediction | 144 | 158 | - | - | |
HCH1g0595 | 280 | MobiDBLite | consensus disorder prediction | 217 | 238 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH1g0595 | HCH-Chr1:54854510 | HCH2g1307 | HCH-Chr2:55166852 | 1.50E-49 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
33062 | PF00808 | CBFD_NFYB_HMF | 2.00E-19 | CL0012 | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH1g0595 | K21752 | - | csv:101209714 | 427.172 |