Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0595 ATGAGGAAGAAGCTCGATACTCGATTTCCTGCTGCTCGAATAAAAAAGATAATGCAAGCAGATGAAGATGTTGGGAAGATAGCCCTAGCAGTGCCTGTTTTAGTCTCTAAAGCGTTGGAACTATTTCTGCAAGACCTCTGTGACCGTACATATGAGATAACTCTGCAAAGAGGAGCAAAGACAATGAATTCATTGCACTTAAAGCACTGCGTTCAAAGCTATAGTGTTTTTGATTTTCTGAGGGATATTGTTAGTAAGGTTCCGGATTACGGTCATGGTCATTCGGATGGTGCTGTTGATGATAGAAAGAGGAGGAAACCCATTGGTGACGATGGCAATGACATTGATGAGTTGAAGAAGAGCAAAATGCATGACGTGAGCCATGGAAGCAGTGGTAGAGGAAGAGGAAGAGGACGAGGACGTGGTCGTGGACGACCTGCTCGATCAGCTGAAAGGGACAACTTCCAACCTCACATGGAATCAGATCCTTGCACATCTCTAGAGAACAGGAATAAGAACCCCAACCCAGATGTGCACATGGAGCATGGTAGTGAGCCTAGTGAAACATTAAAAGAAAGTGGTGATGCCAATCAAGCTGTTCAAAATTTCGATCTTAATGCTGATGTCAATACAAATGAAGACTCCAAGACTGCAGCAGCAGCAGCAGCAGTGTCAGACATGCCCGTCCCATCAGCGGGGCCCAGTATCGAGACTAAAACTGACGAGCTTGCTGCCTGGCCGCTTTCTGACGTGGACAAAATGTCAATTGACCCTCTTCAATATGCTGCACACCTGAGTACAAGGATAGACGAGGAAGATGAAGATTATGATGAGGAAGAGTAA 843 45.31 MRKKLDTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQSYSVFDFLRDIVSKVPDYGHGHSDGAVDDRKRRKPIGDDGNDIDELKKSKMHDVSHGSSGRGRGRGRGRGRGRPARSAERDNFQPHMESDPCTSLENRNKNPNPDVHMEHGSEPSETLKESGDANQAVQNFDLNADVNTNEDSKTAAAAAAVSDMPVPSAGPSIETKTDELAAWPLSDVDKMSIDPLQYAAHLSTRIDEEDEDYDEEE 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 54854510 54857637 + evm.model.ptg000006l.730 HCH1g0595 538614

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0595 280 Gene3D Histone, subunit A 1 86 IPR009072 GO:0046982(InterPro)
HCH1g0595 280 MobiDBLite consensus disorder prediction 174 189 - -
HCH1g0595 280 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 4 169 IPR050568 GO:0001046(PANTHER)|GO:0005634(PANTHER)|GO:0016251(PANTHER)
HCH1g0595 280 MobiDBLite consensus disorder prediction 159 173 - -
HCH1g0595 280 FunFam dr1-associated corepressor homolog 1 86 - -
HCH1g0595 280 SUPERFAMILY Histone-fold 4 89 IPR009072 GO:0046982(InterPro)
HCH1g0595 280 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 71 IPR003958 -
HCH1g0595 280 MobiDBLite consensus disorder prediction 90 132 - -
HCH1g0595 280 MobiDBLite consensus disorder prediction 90 196 - -
HCH1g0595 280 MobiDBLite consensus disorder prediction 144 158 - -
HCH1g0595 280 MobiDBLite consensus disorder prediction 217 238 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0595 K21752 - - csv:101209714 427.172
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0595 HCH-Chr1:54854510 HCH2g1307 HCH-Chr2:55166852 1.50E-49 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH8g1484 . 35 213 CCAAT-HAP5 Transcription Factor Family AT3G48590 87.9 4.3e-85 311.2
HCH3g0451 . 39 220 CCAAT-HAP5 Transcription Factor Family AT3G48590 85.2 6.2e-84 307.4
HCH4g1759 . 81 225 CCAAT-HAP5 Transcription Factor Family AT3G48590 69.0 1.1e-51 200.3
HCH8g0128 . 82 240 CCAAT-HAP5 Transcription Factor Family AT3G48590 66.3 1.2e-50 196.8
HCH8g0128 . 16 260 CCAAT-HAP5 Transcription Factor Family AT1G08970 54.8 7.0e-56 214.2
HCH4g1759 . 27 260 CCAAT-HAP5 Transcription Factor Family AT1G08970 51.7 2.4e-48 189.1
HCH8g1484 . 5 133 CCAAT-HAP5 Transcription Factor Family AT1G08970 68.8 5.2e-43 171.4
HCH3g0451 . 38 137 CCAAT-HAP5 Transcription Factor Family AT1G08970 81.0 5.8e-42 167.9
HCH8g0128 . 16 249 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.4 1.5e-63 239.6
HCH4g1759 . 81 224 CCAAT-HAP5 Transcription Factor Family AT1G54830 71.5 4.0e-53 204.9
HCH8g1484 . 34 190 CCAAT-HAP5 Transcription Factor Family AT1G54830 65.6 1.1e-50 196.8
HCH3g0451 . 38 195 CCAAT-HAP5 Transcription Factor Family AT1G54830 64.6 2.4e-50 195.7
HCH8g1484 . 34 189 CCAAT-HAP5 Transcription Factor Family AT5G50480 55.3 9.9e-38 153.7
HCH3g0451 . 38 194 CCAAT-HAP5 Transcription Factor Family AT5G50480 54.1 2.2e-37 152.5
HCH3g0451 . 39 219 CCAAT-HAP5 Transcription Factor Family AT5G63470 79.6 6.0e-77 284.3
HCH8g1484 . 35 213 CCAAT-HAP5 Transcription Factor Family AT5G63470 78.2 2.3e-76 282.3
HCH4g1759 . 81 233 CCAAT-HAP5 Transcription Factor Family AT5G63470 63.5 2.6e-48 189.1
HCH8g0128 . 82 240 CCAAT-HAP5 Transcription Factor Family AT5G63470 64.4 3.4e-48 188.7
HCH4g1759 . 50 212 CCAAT-HAP5 Transcription Factor Family AT1G56170 82.1 2.7e-64 241.9
HCH3g0451 . 39 163 CCAAT-HAP5 Transcription Factor Family AT1G56170 73.0 1.4e-49 193.0
HCH8g1484 . 35 158 CCAAT-HAP5 Transcription Factor Family AT1G56170 73.0 1.9e-49 192.6
HCH8g0128 . 54 218 CCAAT-HAP5 Transcription Factor Family AT1G56170 61.5 9.4e-49 190.3
HCH1g0595 . 1 279 CCAAT-HAP5 Transcription Factor Family AT3G12480 53.9 4.1e-61 231.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008681 0 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33062 PF00808 CBFD_NFYB_HMF 2.00E-19 CL0012 HCH TF