Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0595 ATGAGGAAGAAGCTCGATACTCGATTTCCTGCTGCTCGAATAAAAAAGATAATGCAAGCAGATGAAGATGTTGGGAAGATAGCCCTAGCAGTGCCTGTTTTAGTCTCTAAAGCGTTGGAACTATTTCTGCAAGACCTCTGTGACCGTACATATGAGATAACTCTGCAAAGAGGAGCAAAGACAATGAATTCATTGCACTTAAAGCACTGCGTTCAAAGCTATAGTGTTTTTGATTTTCTGAGGGATATTGTTAGTAAGGTTCCGGATTACGGTCATGGTCATTCGGATGGTGCTGTTGATGATAGAAAGAGGAGGAAACCCATTGGTGACGATGGCAATGACATTGATGAGTTGAAGAAGAGCAAAATGCATGACGTGAGCCATGGAAGCAGTGGTAGAGGAAGAGGAAGAGGACGAGGACGTGGTCGTGGACGACCTGCTCGATCAGCTGAAAGGGACAACTTCCAACCTCACATGGAATCAGATCCTTGCACATCTCTAGAGAACAGGAATAAGAACCCCAACCCAGATGTGCACATGGAGCATGGTAGTGAGCCTAGTGAAACATTAAAAGAAAGTGGTGATGCCAATCAAGCTGTTCAAAATTTCGATCTTAATGCTGATGTCAATACAAATGAAGACTCCAAGACTGCAGCAGCAGCAGCAGCAGTGTCAGACATGCCCGTCCCATCAGCGGGGCCCAGTATCGAGACTAAAACTGACGAGCTTGCTGCCTGGCCGCTTTCTGACGTGGACAAAATGTCAATTGACCCTCTTCAATATGCTGCACACCTGAGTACAAGGATAGACGAGGAAGATGAAGATTATGATGAGGAAGAGTAA 843 45.31 MRKKLDTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQSYSVFDFLRDIVSKVPDYGHGHSDGAVDDRKRRKPIGDDGNDIDELKKSKMHDVSHGSSGRGRGRGRGRGRGRPARSAERDNFQPHMESDPCTSLENRNKNPNPDVHMEHGSEPSETLKESGDANQAVQNFDLNADVNTNEDSKTAAAAAAVSDMPVPSAGPSIETKTDELAAWPLSDVDKMSIDPLQYAAHLSTRIDEEDEDYDEEE 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 54854510 54857637 + evm.model.ptg000006l.730 HCH1g0595 538614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0595 280 Gene3D Histone, subunit A 1 86 IPR009072 GO:0046982(InterPro)
HCH1g0595 280 MobiDBLite consensus disorder prediction 174 189 - -
HCH1g0595 280 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 4 169 IPR050568 GO:0001046(PANTHER)|GO:0005634(PANTHER)|GO:0016251(PANTHER)
HCH1g0595 280 MobiDBLite consensus disorder prediction 159 173 - -
HCH1g0595 280 FunFam dr1-associated corepressor homolog 1 86 - -
HCH1g0595 280 SUPERFAMILY Histone-fold 4 89 IPR009072 GO:0046982(InterPro)
HCH1g0595 280 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 71 IPR003958 -
HCH1g0595 280 MobiDBLite consensus disorder prediction 90 132 - -
HCH1g0595 280 MobiDBLite consensus disorder prediction 90 196 - -
HCH1g0595 280 MobiDBLite consensus disorder prediction 144 158 - -
HCH1g0595 280 MobiDBLite consensus disorder prediction 217 238 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0595 HCH-Chr1:54854510 HCH2g1307 HCH-Chr2:55166852 1.50E-49 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33062 PF00808 CBFD_NFYB_HMF 2.00E-19 CL0012 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0595 K21752 - csv:101209714 427.172