Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0598 ATGGGGAAGCTAACGTGCAGCTGCAGTAGCTTCCTAGAGAATTCAAAACCTTACTTCGCTATGATTTCCTTACAGTTTGGCTATGCAGGAATGAATATCATCACTAAAGTATCTCTGAGTAGAGGGATGAGCCATTATGTTCTTGTGGTTTATCGCCATGCCTTTGCCACTGCCTCCATTGCCCCGTTTGTTCTCTTCTTTGAGAGGAGAGGACAGCCAAAGATAACACTCAAAGTTTTCACACAAATTTTTGTGCTGGGTTTACTTGGCCCTGTTATTGATCAGAATTTCTACTATGCTGGGCTAAAATATACTTCACCAACTTTCTCTTGTGCCATGAGCAACATGCTCCCTGCAATGACATTTGTCATGGCAGTAATCTTTAGGATGGAAAAGCTTGAGATGGAGAAACTTAGATGCCAAGCAAAAATTGTTGGAACTTTAGTGACAGTAGCTGGAGCAATGCTGATGACTTTATACAAAGGCCCACTTGTTGAGATGGCTTGGTCTAAGCATTCACAAACTCACAATTCCAATGCCCCAACTGATACTTCTGATAAAGATTGGTTTAAGGGATCTATCTTCCTTATCATTGCCACTTTTGCTTGGGCTTCTCTTTTTGTTTTACAGAACCAAGCATTGAAGACATACAAGAACCACCAGTTCACTCTCACAACACTGGTGTGCTTTGTTGGAACTCTGCAGGCAGTTGCTGTGACATTAGTGGCTGAACACAAACCTTCTGTCTGGAGAATTGGTTGGGATATGAATCTTCTTGCTGCTGCCTATGCTGGAGTTGTGACATCAAGTCTTTCATACTATGTCCAAGGGCTGGTGATGAAGATGAGAGGACCTGTCTTTGCAACTGCTTTTAGCCCTTTGATGATGATCATTGTTTCCATCATGGGCTCTTTTATCCTTGCAGAAAAAATCTTTCTTGGAGGAATAATCGGATCCATCTTGATAGTAATTGGCCTGTATTCAGTGCTATGGGGCAAGCACAAAGAGAATTTGGAGAACAAAAATGTTGATGAAATACCAGAAGCGATAAAGGGTTCTCAAACAGCAAATGCTGGCAATTTGGAAGGTATTGAAGCAAAGGAAAATGTCAAATTACAAGAACCCAACAAGCTTTCTCATTCACTTGTCATCACCATGCCAAATCCCATGAAAGCCAACCAAATTCCAAGAGCATGA 1197 41.52 MGKLTCSCSSFLENSKPYFAMISLQFGYAGMNIITKVSLSRGMSHYVLVVYRHAFATASIAPFVLFFERRGQPKITLKVFTQIFVLGLLGPVIDQNFYYAGLKYTSPTFSCAMSNMLPAMTFVMAVIFRMEKLEMEKLRCQAKIVGTLVTVAGAMLMTLYKGPLVEMAWSKHSQTHNSNAPTDTSDKDWFKGSIFLIIATFAWASLFVLQNQALKTYKNHQFTLTTLVCFVGTLQAVAVTLVAEHKPSVWRIGWDMNLLAAAYAGVVTSSLSYYVQGLVMKMRGPVFATAFSPLMMIIVSIMGSFILAEKIFLGGIIGSILIVIGLYSVLWGKHKENLENKNVDEIPEAIKGSQTANAGNLEGIEAKENVKLQEPNKLSHSLVITMPNPMKANQIPRA 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 54870536 54872944 + evm.model.ptg000006l.727 HCH1g0598 538617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0598 398 SUPERFAMILY Multidrug resistance efflux transporter EmrE 51 161 - -
HCH1g0598 398 PANTHER WAT1-RELATED PROTEIN 19 344 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
HCH1g0598 398 Pfam EamA-like transporter family 18 158 IPR000620 GO:0016020(InterPro)
HCH1g0598 398 Pfam EamA-like transporter family 191 330 IPR000620 GO:0016020(InterPro)
HCH1g0598 398 SUPERFAMILY Multidrug resistance efflux transporter EmrE 250 335 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0949 HCH-Chr10:14123680 HCH1g0598 HCH-Chr1:54870536 3.90E-64 dispersed
HCH1g0562 HCH-Chr1:54561738 HCH1g0598 HCH-Chr1:54870536 1.40E-58 dispersed
HCH1g0598 HCH-Chr1:54870536 HCH9g0974 HCH-Chr9:7272502 6.90E-128 dispersed
HCH1g0598 HCH-Chr1:54870536 HCH9g1265 HCH-Chr9:36718999 4.30E-130 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0598 - - - 0.0