Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0613 ATGGAAAATATGGAGGATATCAAGCCGTTGGTTACGACCTCCAATGACTCGCATGTAGATGGCCGAATAGATACCATTGAAGCTCAATTCTCAGATATCTGTCAGAATGGATTGTTACTGGATGAAAATAGTCGTAATCAAGCCGTGAAGTTATTTAGAGAAACCAAGCACCTTTTGTTGGCAAATATACAAGCTATTGGGAGTGGCATTCCTGAAGAAGCCGAACGCTTTTGGTCCGCCTTTGTTTTGTATTCTGTGAAGAGGCTGAGAGATAGGAGTTTAGACACTTCACATCAGGGATCTGAGAATAATAGCTTCTCTTTGTGCCAGATATTGAGAGTTACAAAGCTCAACATTGTAGAATTTTTCAAAGAGCTTCCTCAGTTTGTTGTTAAAGCTGGCCCGGTATTAAGTAGTCTCTATGGTGCAGACTGGGAGAATAGACTAGAGGCAAAGGAGTTGCAGGCAAATTTTGTGCATCTAAGCCTTTTAAGCAAGTACTATAAGCGTGTCTACCGGGAATTCTTCATCACCAACGATGTTAATGTTGAAAATCATCCAGCTATTTCCTGCCCTACTGGTTACCTGTCGGATTACCATCGTTTTGGATGGTTGTTATTTTTGGCACTTCGTGTACATGCTTTCAGCCGATTTAAGGACTTGGTGACTTGCACTAACGGTTTGGTTTCCATTTTGGCTATTTTAATTCTTCATGTTCCTGTTCAATTCAGAAATTTCAATGTCCTTGACTCTCAACGCTTTGTTAAGAAAGGTGCCAAAGGAGTGGACCTGCTTGGATCACTTTGTAACATCTATGACACCTCGGAAGAAGAACTTAGGAAAGTAATGGAGAAGGCGAATAATTTGATAGAAGATATTCTGAAGAAAAAACCTTGTTTTGCTTCTGAGTGTAATAACAAAACCTTGGAGAATATTGACACAGAGGGTTTGATCTATTTTGAGAACTTAATGGAGGAATCATCTTTGTCATCCAGTTTAGAAATTCTGGAAAAGGACTATGAAGATGCAATTCGTAATAAAGGTGAGCTTGATGAAAGAGTGTTTGTTAATGACGAGGACAGCTTACTCGGGTCAGGTAGCTTGTCTGCAGGTGCTGTTACTATGGGTGGCATCAAGAGAAAGTTTGATTCAATATCATCACCTGCAAGGACAATAACAAGCCCACTGTCTCCACTTCGTTCTCCTAATTCTCATGCCAATGGTATTCTTAATAGCGGCAGTGCAAAACTGGCTGCCACACCTGTTAGCACAGCAATGACAACGGCAAAGTGGCTTAGAACTGTTGTTTCTCCACTTCCAGCACAACCTTCAGCAGAGATGCAGCGCTTTTTGTCTTCATGTGATAGGGATGTAACTGATGATGTAGTTCGCAGGGCACACATTATATTAGAGGCCATATTTCCCAATAATGCTTTAGGAGAGCGCTGTATAGGTGGAAATCTACCGAGTGTAAATCTCATGGATAACATCTGGGCAGAACAGCGGCGACTAGAAGCACTGAAGTTATATTTTAGAGTCCTGGAAGCAATGTGCAGAGCAGAGGCTCAGATATTGCATGTGACTAATTTGACCTCTTTACTGACTAACGAGAGGTTCCATAGATGCATGTTGGCTTGTTCTGCCGAATTGGTTTTGGCAACACATAAAACTGTTACAATGTTGTTTCCTACAGTATTGGAGAGAACTGGAATTACAGCATTCGATCTTAGTAAGGTGATAGAGAGCTTCATTAGACATGAAGAATCACTTCCTAGAGAATTGAGGCGACATCTTAATTCCCTGGAAGAACGACTTTTGGAAAGCATGGTATGGGAAAAGGGTTCGTCAATGTATAATTCCCTCATTGTTGCAAAACCTGCCCTTGCTACAGAAATAAATCGTCAGGGTTTGTTAGCAGAACCCATGCTATCTTTGGATGCAATTGCTGCTCACATCAACTTTTCAGGCATTGTGGTTCCCACCATACCTAATTTGCAGAAGCATGAGAGTTCAGCTGGTCAGAATGGAGAGATCAGGTCACCAAAAAGATTGTGCACAGAATTAAGAAGTGTACTAATGGAACGGAATTCATTTACTTCTCCAGTGAAGGATCGTGTCATGGCTCTAAGTGGTATGAAGTCTAAGCTTCTGCAACCTCCTTTACAGTCGGCATTTGCAAGTCCAACTCGGCCTAATCCTAGTGGTGGAGGAGAGACGTGTGCTGAAACTGGAATTAACATATTTTTCAGCAAGATCATCAAGTTGGCTGCCGTTAGAGTCAATGGTATGGTGGAAAGGTTGCAGTTATCACATCAGATCAGGGAGAATGTGTACTGCCTTTTTCAACAGATACTTAGTCAAAAAACGTCACTTTTATTTAATCGTCACATTGACCAGATAATCCTTTGTTGTTTCTATGGAGTTGCAAAGATATCTCAATTGAGCCTGACTTTCAGGGAAATCATTTTCAACTACAGGAAGCAACCACACTGTAAACCACAAGTTTTTCGTAGTGTGTTTGTCGATTGGTCTTCAACACGTCGTAATGGGAAATCTGGACAAGATCACGTTGATATAATTACATTCTACAATGAAATATTTATTCCTACTGTAAAACCTCTGCTGGTTGAGATTGGGCCAGCCGGATCAACCACAAAATCTGACAAGATTACTCAAGTCAACCACAATACTGATGCACCCTGTCCTGGATCACCTAAGATATCTCCTTTTCCAAGTCTTCCTGATATGTCCCCAAAGAAAGTATCTTCAGCTCACAATGTCTATGTCTCTCCATTAAGATCATCAAAGATGGATGCCTTGATTTCACACAGCTCTAAAAGCTATTATGCTTGTGTTGGAGAAAGCACTCATGCGTTTCAAAGCCCTTCAAAAGACCTCACTGCCATAAACAACCGTTTGAATTGTACCAGGAAACTACGAGGCACTCTAAATTTTGATGATGCAGATGTTGGTTTAGTTAGTGATTCTCTTGTGGCCAACAGCCTTTACCTACAAAATGGAAGTTGTGGTTCTTCTTCAGGTGCACCAATCAAATCTGAACAACCTGATTCATAG 3075 41.04 MENMEDIKPLVTTSNDSHVDGRIDTIEAQFSDICQNGLLLDENSRNQAVKLFRETKHLLLANIQAIGSGIPEEAERFWSAFVLYSVKRLRDRSLDTSHQGSENNSFSLCQILRVTKLNIVEFFKELPQFVVKAGPVLSSLYGADWENRLEAKELQANFVHLSLLSKYYKRVYREFFITNDVNVENHPAISCPTGYLSDYHRFGWLLFLALRVHAFSRFKDLVTCTNGLVSILAILILHVPVQFRNFNVLDSQRFVKKGAKGVDLLGSLCNIYDTSEEELRKVMEKANNLIEDILKKKPCFASECNNKTLENIDTEGLIYFENLMEESSLSSSLEILEKDYEDAIRNKGELDERVFVNDEDSLLGSGSLSAGAVTMGGIKRKFDSISSPARTITSPLSPLRSPNSHANGILNSGSAKLAATPVSTAMTTAKWLRTVVSPLPAQPSAEMQRFLSSCDRDVTDDVVRRAHIILEAIFPNNALGERCIGGNLPSVNLMDNIWAEQRRLEALKLYFRVLEAMCRAEAQILHVTNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPTVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLIVAKPALATEINRQGLLAEPMLSLDAIAAHINFSGIVVPTIPNLQKHESSAGQNGEIRSPKRLCTELRSVLMERNSFTSPVKDRVMALSGMKSKLLQPPLQSAFASPTRPNPSGGGETCAETGINIFFSKIIKLAAVRVNGMVERLQLSHQIRENVYCLFQQILSQKTSLLFNRHIDQIILCCFYGVAKISQLSLTFREIIFNYRKQPHCKPQVFRSVFVDWSSTRRNGKSGQDHVDIITFYNEIFIPTVKPLLVEIGPAGSTTKSDKITQVNHNTDAPCPGSPKISPFPSLPDMSPKKVSSAHNVYVSPLRSSKMDALISHSSKSYYACVGESTHAFQSPSKDLTAINNRLNCTRKLRGTLNFDDADVGLVSDSLVANSLYLQNGSCGSSSGAPIKSEQPDS 1024
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 55055414 55061985 + evm.model.ptg000006l.712 HCH1g0613 538632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0613 1024 Coils Coil 333 353 - -
HCH1g0613 1024 MobiDBLite consensus disorder prediction 886 901 - -
HCH1g0613 1024 MobiDBLite consensus disorder prediction 886 918 - -
HCH1g0613 1024 Gene3D - 706 910 - -
HCH1g0613 1024 SUPERFAMILY Cyclin-like 743 912 IPR036915 -
HCH1g0613 1024 FunFam Retinoblastoma-related protein 1 695 905 - -
HCH1g0613 1024 Coils Coil 272 296 - -
HCH1g0613 1024 Pfam Retinoblastoma-associated protein B domain 745 872 IPR002719 GO:0005634(InterPro)|GO:0051726(InterPro)
HCH1g0613 1024 Gene3D - 423 611 - -
HCH1g0613 1024 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 4 1021 IPR028309 GO:0000785(PANTHER)|GO:0000977(PANTHER)|GO:0005667(PANTHER)|GO:0006357(InterPro)|GO:0030154(PANTHER)|GO:0051726(InterPro)|GO:2000134(PANTHER)
HCH1g0613 1024 Pfam Domain of unknown function (DUF3452) 100 238 IPR024599 -
HCH1g0613 1024 FunFam Retinoblastoma-related protein 1 423 611 - -
HCH1g0613 1024 SMART RB_A_2 420 621 IPR002720 GO:0005634(InterPro)|GO:0051726(InterPro)
HCH1g0613 1024 SUPERFAMILY Cyclin-like 428 623 IPR036915 -
HCH1g0613 1024 Gene3D - 199 357 - -
HCH1g0613 1024 FunFam Retinoblastoma-related protein 1 199 357 - -
HCH1g0613 1024 Pfam Retinoblastoma-associated protein A domain 420 621 IPR002720 GO:0005634(InterPro)|GO:0051726(InterPro)
HCH1g0613 1024 SMART DUF3452_2 94 238 IPR024599 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33063 PF01858 RB_A 1.50E-63 CL0065 HCH TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0613 K04681 - csv:101219810 1762.27