Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0618 ATGGCCGATGCCAGTCCAAGGACTGATATCTCTACGGATGTTGACACAGATGACAAAAACCAAAGGCTTGATATGGTTCAATATAATACTCTCGTGGCTCCTGATTCCGGCGATAGAACAAAAGATAGATCCGATCAGAAGTCTCTTCGCAGACTTGCACAAAATCGTGAAGCTGCTAGAAAAAGCCGATTGAGGAAAAAAGCATATGTTCAACAGCTGGAGAGTAGTCGTTTGAAGTTGACCCAACTAGAACAGGAGCTTCAGAGAGCACGGCAGCAGGGGATCTTCATATCAAGCTCAGGAGACCAGGCCCATTCAATGGCTGGAAATGGAGCTATGGCATTTGATGTGGAATATGCACGATGGTTGGAAGAGCAAAACCGGCAGATCAATGAATTGCGGTCAGCAGTAAACTCGCATGCAAGTGAGACTGAACTTCGAATGATTGTTGATGGTGTCTTGGCGCATTATGATGAGGTTTTTAGGCTAAAGGGCATAGCTGCAAAAGCTGATGTTTTCCATTTATTGTCTGGCATGTGGAAAACACCTGCGGAAAGATGTTTTTTGTGGCTTGGTGGTTTCCGCTCATCCGAGCTGCTAAAGCTCCTTGTCAATCAATTAGAGCCCCTCTCAGAACAGCAGTTGATGGGCATATCCAACTTGCAGCAGTCATCACAACAGGCTGAAGATGCACTGTCTCAAGGCATGGAGGCTTTACAACAATCCTTGGCTGAGGCATTATCCAGTGGATCTCTTGGCTCCTCCAATACCTCTGGCAATGTGGCAAACTACATGGGTCAAATGGCCATGGCAATGGGTAAACTCGGAACCCTCGAAGGGTTTATTCGTCAGGCTGACAATCTACGGCAACAAACGCTACAACAAATGCTTCGTATATTGACGACTCGTCAGTCAGCTCGTGCACTTCTCGCAATTCACGATTACTTCTCCAGGCTACGAGCCCTCAGTTCCCTATGGCTTGCTCGTCCAAAAGAGTGA 999 46.85 MADASPRTDISTDVDTDDKNQRLDMVQYNTLVAPDSGDRTKDRSDQKSLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQAHSMAGNGAMAFDVEYARWLEEQNRQINELRSAVNSHASETELRMIVDGVLAHYDEVFRLKGIAAKADVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLVNQLEPLSEQQLMGISNLQQSSQQAEDALSQGMEALQQSLAEALSSGSLGSSNTSGNVANYMGQMAMAMGKLGTLEGFIRQADNLRQQTLQQMLRILTTRQSARALLAIHDYFSRLRALSSLWLARPKE 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 55122479 55127268 - evm.model.ptg000006l.707 HCH1g0618 538637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0618 332 Pfam Seed dormancy control 129 204 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
HCH1g0618 332 FunFam BZIP family transcription factor 46 95 - -
HCH1g0618 332 Coils Coil 66 93 - -
HCH1g0618 332 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 50 65 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH1g0618 332 ProSiteProfiles DOG1 domain profile. 112 329 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
HCH1g0618 332 Pfam bZIP transcription factor 47 87 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH1g0618 332 SUPERFAMILY Leucine zipper domain 47 90 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH1g0618 332 SMART brlzneu 43 106 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH1g0618 332 MobiDBLite consensus disorder prediction 1 49 - -
HCH1g0618 332 Gene3D - 46 98 - -
HCH1g0618 332 Coils Coil 123 143 - -
HCH1g0618 332 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 45 89 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH1g0618 332 PANTHER TRANSCRIPTION FACTOR TGA9 24 332 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0618 HCH-Chr1:55122479 HCH9g1309 HCH-Chr9:41872209 1.20E-136 dispersed
HCH1g0618 HCH-Chr1:55122479 HCH4g0180 HCH-Chr4:1035219 1.70E-135 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33064 PF14144 DOG1 1.90E-32 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0618 K14431 - csv:101216885 559.681