Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH1g0621 ATGGAAGAAACGGCGGAGCTTGCTGAACCACAAATCGTCACTAAAAAAAGATGTTATTCCTGCAAATACTGTGGAATTACCAGATCCAAAAAGTCTCTACTTGCTTCTCACATTCTCACTCATCATCAGGTCGAGAGTGAGAATCAGGAAAGTGATGAAGATAATGAAACAGGAGAAGGAAAATCTAATACATGCCAGGAATGTGGTGCTAGTTTTAAAAAACCTGCTTACTTGAAACAGCATATGCAAAGCCATTCCTTCGAGAGACCGTATGTTTGTTCTGTAGATGGTTGTCATGCGAGCTATAGAAGAAAGGATCACTTGACTCGCCACCTTCTCCAGCATCAAGGAACAATAGTCAAGTGTCCAACTGAGAGCTGCAGCATTGAATTTGCGGATCAATGTAGCATGAAAAGTCACTTAAAGGAATTCCATAATAATGAGGCCCCTTCAGAAGTTAAATGTCAGAAGCCATTTGTTTGTGCTGAAGTTGGATGTGGAAAGGCGTTTAAATATGCATCACAACTACAAAAACACGAGGATTCTCATGTGAAGCTGGAGTCAGTGGAGGCACTCTGCGCGGAACCAGGTTGCATGCAGTATTTCACCAATGAAAAATGTCTCAGAGCTCATATACAATCATGCCATCAATACATGAACTGTGAGATATGTGGATCCAGACAGTTGAGGAAGAACATCAAACGACATCTACGAACCCATGAAAGCAAAAGTACTGAATATGTAATTGAATGCGTGCATGAAGGATGTAATAATGTGTTCTCATCTGTTTCAAATCTCCGTCAACATGATAAAGTTGTCCACCAGGGACTCAAACCTTTTGCATGTAGCTTTTCTGGTTGCGGCATGAGATTTGGATACAAGCATGTTAGAGACAATCATGAGAAAACTGGGCTACATGTTTACACTTGTGGTGATTTTGAAGAAGCCGACGAGCAATTCCGCTCGAGGCCAAGGGGAGGGAGAAAAAGGGTGTGTCCAACCATTGAAATGCTTGTGCGGAGGAGGGTCACCCCCCCAAACCAGTTGGATTTCATGTTTGAATGA 1065 42.25 MEETAELAEPQIVTKKRCYSCKYCGITRSKKSLLASHILTHHQVESENQESDEDNETGEGKSNTCQECGASFKKPAYLKQHMQSHSFERPYVCSVDGCHASYRRKDHLTRHLLQHQGTIVKCPTESCSIEFADQCSMKSHLKEFHNNEAPSEVKCQKPFVCAEVGCGKAFKYASQLQKHEDSHVKLESVEALCAEPGCMQYFTNEKCLRAHIQSCHQYMNCEICGSRQLRKNIKRHLRTHESKSTEYVIECVHEGCNNVFSSVSNLRQHDKVVHQGLKPFACSFSGCGMRFGYKHVRDNHEKTGLHVYTCGDFEEADEQFRSRPRGGRKRVCPTIEMLVRRRVTPPNQLDFMFE 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 55166441 55169062 + evm.model.ptg000006l.704 HCH1g0621 538640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH1g0621 354 ProSitePatterns Zinc finger C2H2 type domain signature. 93 115 IPR013087 -
HCH1g0621 354 ProSitePatterns Zinc finger C2H2 type domain signature. 251 274 IPR013087 -
HCH1g0621 354 Gene3D Classic Zinc Finger 92 118 - -
HCH1g0621 354 SUPERFAMILY beta-beta-alpha zinc fingers 77 117 IPR036236 -
HCH1g0621 354 ProSiteProfiles Zinc finger C2H2 type domain profile. 19 47 IPR013087 -
HCH1g0621 354 ProSiteProfiles Zinc finger C2H2 type domain profile. 91 117 IPR013087 -
HCH1g0621 354 PANTHER ZINC FINGER PROTEIN 48 349 IPR051061 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0005730(PANTHER)|GO:0006357(PANTHER)|GO:0080084(PANTHER)
HCH1g0621 354 ProSitePatterns Zinc finger C2H2 type domain signature. 161 183 IPR013087 -
HCH1g0621 354 ProSiteProfiles Zinc finger C2H2 type domain profile. 63 90 IPR013087 -
HCH1g0621 354 SUPERFAMILY beta-beta-alpha zinc fingers 12 72 IPR036236 -
HCH1g0621 354 ProSitePatterns Zinc finger C2H2 type domain signature. 65 85 IPR013087 -
HCH1g0621 354 Gene3D Classic Zinc Finger 6 91 - -
HCH1g0621 354 ProSiteProfiles Zinc finger C2H2 type domain profile. 159 188 IPR013087 -
HCH1g0621 354 ProSiteProfiles Zinc finger C2H2 type domain profile. 249 279 IPR013087 -
HCH1g0621 354 SUPERFAMILY beta-beta-alpha zinc fingers 272 312 IPR036236 -
HCH1g0621 354 ProSitePatterns Zinc finger C2H2 type domain signature. 282 306 IPR013087 -
HCH1g0621 354 ProSiteProfiles Zinc finger C2H2 type domain profile. 120 150 IPR013087 -
HCH1g0621 354 SMART c2h2final6 63 85 IPR013087 -
HCH1g0621 354 SMART c2h2final6 191 216 IPR013087 -
HCH1g0621 354 SMART c2h2final6 19 41 IPR013087 -
HCH1g0621 354 SMART c2h2final6 159 183 IPR013087 -
HCH1g0621 354 SMART c2h2final6 120 145 IPR013087 -
HCH1g0621 354 SMART c2h2final6 280 306 IPR013087 -
HCH1g0621 354 SMART c2h2final6 91 115 IPR013087 -
HCH1g0621 354 SMART c2h2final6 249 274 IPR013087 -
HCH1g0621 354 SMART c2h2final6 219 240 IPR013087 -
HCH1g0621 354 MobiDBLite consensus disorder prediction 42 64 - -
HCH1g0621 354 Pfam Zinc finger, C2H2 type 64 85 IPR013087 -
HCH1g0621 354 Pfam Zinc finger, C2H2 type 19 41 IPR013087 -
HCH1g0621 354 Pfam Zinc finger, C2H2 type 91 115 IPR013087 -
HCH1g0621 354 Pfam Zinc finger, C2H2 type 159 183 IPR013087 -
HCH1g0621 354 SUPERFAMILY beta-beta-alpha zinc fingers 231 285 IPR036236 -
HCH1g0621 354 FunFam Zinc finger 45-like 60 86 - -
HCH1g0621 354 Gene3D Classic Zinc Finger 245 325 - -
HCH1g0621 354 ProSitePatterns Zinc finger C2H2 type domain signature. 122 145 IPR013087 -
HCH1g0621 354 Gene3D Classic Zinc Finger 157 183 - -
HCH1g0621 354 SUPERFAMILY beta-beta-alpha zinc fingers 156 183 IPR036236 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33065 PF00096 zf-C2H2 0.0011 CL0361 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH1g0621 K09191 - mdm:103402266 483.796